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Detailed information on CNT30117980


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697566Oryza nivaraOryza sativa10060.1498.471047forward
CNT30555549Oryza nivaraOryza glaberrima77.8445.8493.62815forward
CNT30104337Oryza nivaraOryza rufipogon10067.4299.811047forward

Expression of CNT30117980

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MASMLKKTDAVMKIIFNLFYYQLLSMASSFFVADLSLFVTDSILPF*

>peptide 2 (32 aa)
MKLLLCKQRRVTSEYDSERWCEVATTGRWRVC*

Sequence

>CNT30117980
TAGGTTTATATCAATCAATTATTAGCTTAAAGAGGATGATATACAGAATTCTATTCTGTGGACCAAACGGAACCTTGATGGTTTGAGGACAGTCCCTTCA
ATGATATACAAATCAAATATTTTCTTGTGTCCTTGAGAAATTTGGAAGACGCACTGTTAAAATCCGTGTCTTTTTTGCTATGCATGGCTGATGTGGACTC
TAATTTCTCCTCGGTTTTGAACTTTTGATGCGGACTCTAATTGCAAGATCCTTTTGAAAATCGTGGTTTTTCTTCCACAATGTGGTTTTGACTAAATAAA
CGTTCAAAGTTTAAAAAAAAAGCCCTCATGACTTGACTTGTGCATTTTTGTATCAACCTGAATCAGCTCAGCATCTTTTCTTGGTTTGCAACATTGCATA
AGTTTGTAGGGTTTTAGAAGCCGTGCAGAGCACTACAACAGTGCCTACAATCCGTCTGTTGGATGCACGGCCTTTATGTGATCATTCTAATGGAGTAATG
GCCTTCCATTGCTATATCTGGAACATATAGATAACAAGTCTTGTTTTGAGTGCAAAAACTGTCACTTTGATGTGATCTTTTGAATTTGTACAAATTTTAA
TAGTGGGCAGGTTTAAGCAAGGATGAAGCTGCTGCTGTGTAAGCAAAGGAGGGTAACTTCTGAATATGACTCTGAACGTTGGTGTGAAGTTGCAACAACG
GGAAGATGGCGAGTATGTTGAAGAAAACTGATGCAGTCATGAAGATCATATTTAATCTTTTCTACTACCAGTTGTTGTCGATGGCTTCTTCATTCTTTGT
TGCTGATCTATCGCTGTTTGTCACCGACTCGATACTTCCCTTTTAGTTTTAGGTTGACTAAGGCTAGGTTTGTCACCGACTCGATACTTCCCTTTTAGTT
TTAGGTTGACTAAGGCTAGGTTGACTAAGGCTAGCTTAAGCTTGGGTATTTTGTCTGTATGATCACCTGCTTTGCTTTCCCTGTTCCCAAATGTACTCTG
AAAATAAGAACTATGTTATTTCTCTTCATATCAAATGTATAAATGGT