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Detailed information on CNT30117970


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-21

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597037Oryza nivaraOryza meridionalis42.6453.6393.24281forward
CNT30104166Oryza nivaraOryza rufipogon47.1956.4499.36311forward

Expression of CNT30117970

Peptides detected in this lncRNA

>peptide 1 (57 aa)
RQTTHLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

>peptide 2 (67 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGAARGRPSRPRSPGRRRKA*

Sequence

>CNT30117970
CGACAAACCACTCACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATC
GAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGC
ACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGC
GCGGCGAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCG
TCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGAGCTGCTCG
TGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCA
CATTCAGAGCACCATCGAACCTCAGGGAGGCAGTCAGTGAGGAGATGACCTGCAGCACA