Detailed information on CNT30117954


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697185Oryza nivaraOryza sativa11.4941.0999.37159forward
CNT30394143Oryza nivaraTriticum turgidum10.8425.7781.33150forward
CNT30261311Oryza nivaraBrassica rapa8.8932.2885.37123forward
CNT3017055Oryza nivaraZea mays9.3944.0784.62130forward
CNT30477141Oryza nivaraArabidopsis halleri9.146.3280.95126forward
CNT30597034Oryza nivaraOryza meridionalis9.6157.33100133forward
CNT30104230Oryza nivaraOryza rufipogon47.1126.4799.69652forward
CNT30551796Oryza nivaraOryza brachyantha12.7922.6192.09177forward
CNT3040010Oryza nivaraMarchantia polymorpha8.6726.3781.67120forward

Expression of CNT30117954

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSNKDQGSVWSEIHTLSTLIPGTIFCSVRMSTIFLPSTVDWYRVSSKRIAPEMYCPKPGRVRLIHGKDTPSW*

>peptide 2 (30 aa)
MHYITLKSRFELEMPVYLNHVISKQVFYVH*

>peptide 3 (29 aa)
MARIPLPGDAMVFYSKKDKVFNLLVLNHN*

>peptide 4 (74 aa)
METVTGLGAAAWRVAPHSDFLGRKDDLRRVADAIASGFSEGKGEQGATTLSLTQAFSLQSFLRGGVRSAATSQI*

>peptide 5 (42 aa)
MKLHKVPSLVIDIKRKQMHAKNHRTVRMIFRKHTAVLTSSSS*

>peptide 6 (56 aa)
TTWRSERPAGSMPPRARQGRRDLGTMTRCWSQQGAQDPDIEHKFSSLTALINLILL*

>peptide 7 (35 aa)
MSCLDADVEFTNVLLVYFESLSSFGIHKSYLFYFL*

Sequence

>CNT30117954
TCACCACTTGGCGAAGCGAGCGCCCTGCTGGTAGTATGCCGCCTCGCGCGAGGCAAGGCCGTCGAGACCTTGGCACCATGACTCGTTGTTGGAGCCAGCA
AGGGGCACAAGACCCTGACATCGAGCACAAATTCAGTTCTTTAACAGCTTTAATAAATTTGATACTACTTTGAATGAGCAACAAGGATCAGGGGTCAGTT
TGGAGTGAAATTCATACCTTGTCGACCTTGATACCTGGAACGATTTTCTGCTCGGTGAGGATGTCGACAATCTTCTTGCCATCTACAGTTGACTGGTACA
GAGTCTCCTCGAAGAGGATAGCACCGGAGATGTACTGTCCCAAGCCCGGTCGCGTTCGACTCATCCATGGCAAGGATACCCCTTCCTGGTGATGCAATGG
TTTTCTACAGCAAGAAGGATAAAGTTTTTAATCTTCTAGTTCTGAACCATAATTGAATGAAAAACTCATCTTAAGAATTTATTTATCCAAAGTTGATAAA
AGTATGCTTGTTATGTTGTAGGATTAGAAGTTCCAAACTTTTCTTCTGAATTATGACCTGCAGATGGTTCATAGAACATAAGCAGGACACATGAATGCTT
CATGCTTTATCCTTACAACTGCTAGTGGTTAACCCATGTCATGTCTTGATGCAGATGTCGAGTTTACAAATGTATTACTAGTATATTTTGAGTCTCTAAG
TTCATTTGGTATACACAAATCATATCTATTTTACTTTCTGTGAAGTTGAAGATAGAAATTTTCCTTCAAATGCATTATATAACTTTGAAGAGTAGATTTG
AACTAGAGATGCCAGTATATTTGAATCATGTTATATCAAAACAGGTGTTTTATGTTCACTGAATTCTGCTATATATAACTTAGCTTGACTGCCCATCCTA
TTTGATTTCCTGACGATAAAGTGCTTATATCTATCATGAAACTACATAAAGTTCCTTCACTTGTCATTGATATAAAGAGGAAACAAATGCATGCCAAAAA
CCATAGAACAGTACGGATGATATTCAGAAAGCATACCGCGGTCTTGACAAGCTCATCGTCGTAGGCACCAGCGCGGACAACCATGGAGACGGTCACCGGC
TTGGGGGCGGCAGCCTGGCGGGTGGCACCCCATTCAGACTTCTTGGGAAGGAAAGATGACTTGAGGAGAGTAGCAGACGCCATTGCTTCCGGTTTCTCTG
AAGGCAAAGGAGAGCAAGGTGCTACTACCCTCTCCTTGACACAGGCCTTTTCTTTGCAGTCTTTCCTTAGAGGGGGGGTGAGAAGTGCAGCAACTTCTCA
GATTTAAGGGCAAAAGGGATATGAGTTGTGAGGTGGAGGTTGGCCTCCTGGATATGAATGGCTCTGCTTTGGTTGCTCCAATCC