Detailed information on CNT30117945


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676931Oryza nivaraSetaria viridis21.840.6489.01191forward
CNT30297329Oryza nivaraTriticum aestivum20.3276.3991.01178forward
CNT30392715Oryza nivaraTriticum turgidum20.4377.4990.5179forward
CNT30663719Oryza nivaraTriticum dicoccoides20.6669.3590.61181forward
CNT30597047Oryza nivaraOryza meridionalis43.9539.6199.48385forward
CNT30557055Oryza nivaraPanicum hallii19.9823.4386.29175forward
CNT3040014Oryza nivaraMarchantia polymorpha9.0226.2589.8779forward

Expression of CNT30117945

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

>peptide 2 (63 aa)
SQACIYTQNFAVTKSIHRPHIQVVYRFVYTQGYCRGKTRGMYIKRSRKDSCDEIHDEPRMFSR*

>peptide 3 (40 aa)
MYLRNGGVAGKAPGSLLHGEFRWAVGDADNSAPEDEELHVR

>peptide 4 (31 aa)
MPSLASAASPSLVYLPSCASELALARRSSAV*

>peptide 5 (45 aa)
MLTVEEDLRLDNRHQPVVLVLFKKIVHACSIIRKEIYYVLAVFVL*

>peptide 6 (45 aa)
TSMYIYAKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

Sequence

>CNT30117945
TCACAAGCATGTATATATACGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAGGTAGTATACAGATTCGTCTACACACAAGGTTATT
GCAGAGGCAAAACACGAGGTATGTATATCAAACGCTCTAGAAAAGATTCATGTGATGAAATACATGATGAACCACGTATGTTCTCAAGGTAAAATTAATT
AATGCAGTATAGTTTTAACTTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCGAGGTACTAGCAGTATAGCAGTAGCT
GTAGTACGTAGCAGCAGCAGCAGCAGGTTCACTGTCTTGATTGGATTGGATCGGATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGC
GGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGGAGGAGCAGCGCGGTGTAGTCAGATACTTGCTCAGGGGTGGCC
CTGTCCTTGCACTCGGCACCGGGTGTCACCATGCTTGGCTTGAGGAGGATGCCCTCGAACATCACATTGTTCTCGGCCATGTAGAAGAAGGTCCTGTCGA
TGCCATGCTCACCGTCGAGGAGGATCTCAGGCTCGACAATCGGCACCAGCCCGTTGTCCTAGTATTATTCAAGAAAATTGTTCATGCTTGCAGCATCATC
AGGAAAGAGATTTATTATGTTCTTGCAGTTTTTGTTCTGTAATCAAGTTTGATATGTACCTGAGAAATGGCGGCGTAGCGGGCAAGGCCCCAGGCAGCCT
CCTTCACGGCGAGTTCAGATGGGCCGTTGGGGATGCTGACAACAGTGCGCCTGAAGATGAAGAACTTCATGTCAGA