Detailed information on CNT30117942


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SPV5|NEC1_NICPL, E-value = 2e-24

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618191Oryza nivaraSesamum indicum20.596.4791.6784forward

Expression of CNT30117942

Peptides detected in this lncRNA

>peptide 1 (63 aa)
LYRLGLLGGKLGLDLVHLLVVDLEGLGEDGVGHRRRGGEERGRGGRRRRRPGRWCGRGACWRW*

>peptide 2 (57 aa)
MRARETPRVLRPGTFSTLAPVTTAPVVVLAAAPGLASTPEKKSSAVAFALHGNPFTFT

Sequence

>CNT30117942
TCTTATATCGTCTAGGTCTTCTTGGGGGCAAACTTGGCCTTGATCTTGTCCACCTCCTCGTCGTCGATCTGGAAGGCCTTGGCGAGGACGGCGTCGGGCA
CCGCCGGCGAGGCGGCGAAGAGCGTGGCCGCGGGGGAAGACGAAGACGTCGCCCTGGGAGATGGTGCGGGAGAGGAGCTTGTTGGCGGTGGTGACGAAGC
CGACGTCGAGCTCGCCGCCGGGGGCGTAGTCGATGCGGGCGAGGGAGACGCCCAGGGTGTTGAGGCCCGGGACCTTCTCGACGTTGGCGCCGGTGACCAC
GGCGCCGGTGGTGGTGTTGGCGGCGGCGCCGGGGCTGGCGAGCACGCCGGAGAAGAAGTCGTCCGCCGTCGCGTTCGCCTTGCACGGGAACCCGTTCACC
TTCACCTC