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Detailed information on CNT30117930


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000316, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555534Oryza nivaraOryza glaberrima21.8155.1497.3408forward
CNT30339734Oryza nivaraEragrostis tef3.5324.3589.3966forward
CNT30578174Oryza nivaraOryza barthii57.0835.3897.191068forward

Expression of CNT30117930

Peptides detected in this lncRNA

>peptide 1 (91 aa)
MEPMPLLSMDVQRIAFFGGWPLFYSIHTIGSTRAVQPSVAELKLQPDLLRSWLSSWLNPIIQTNKNLLLSAELASIAYFSCHYYKKQIYPL*

>peptide 2 (71 aa)
MHKQREEGRPQRRRYAKGGRGGRAGMVRLVGREGKKLVGPTDGQWLRVAKGWLSLASSSPCLAMAIFCQVG*

>peptide 3 (62 aa)
MKPRRSFLTSIKSPRESDHRPAIPISSSDSKPSSLSLSLCVPDSMVTAGSSRGGRVGGAGRR*

Sequence

>CNT30117930
GGTTCTTATGTTTCGTTTTTGCTCAGCATTTAGTCATGGCACAAGATCACACCATGAATAAACTTTAGCACCAAAACTGTCACTACGTTTTAGTTCATGG
CCTTTAACTGTCAGGCTTAAAATACAGTAATAATCCAGAGCAAAAGGTTAAGCTGGCCATACGAGACAAAAGAAATAAAAAAGATGGCCGAGTAGAGCAT
CTCCAACTGTCTCTCTAAATCCAACTCTCCAAATATTTATTTGGCTAACTCTCCATCTAATTTGGCAAGTCAAACTCGTTGTTTACTCCAACAGCCTCTT
CATTCACCCTCTCTATTCTAACTCTATGACAGTGGGACCCACGTGTTAGCCTCTACAACCCTTCTTTTTCTTCCTCATACTTCTCCATTTTCTCTCCATT
TTCCTCACGATCCTCTTTATCCTCTCTGGTGGACAACGCGGGGCGATGGCGACGACGGATCCTCGCCGGCCTCATCCTCCTCGACAGTTGCTGGAGGAGG
AGACGGCGAGCTTCCAGTCGTCGGAGTAGCGGGATCCGGAGGAGGCGCGCAGCGGCAGCGGGCGGCAGTGGCCACGCGCGGCGAGGCACCGCCCCGTTCG
CTCCGCTCGCTGCGCTGACCGGTCGAGGTGGCCGCTGCCGGTCTCCGCTCCGCTCGCCAAGGTACCATCTCGCTGGCGGCAATGAAGCCGAGGCGCTCCT
TCTTGACCTCTATAAAATCTCCAAGAGAATCAGATCACCGACCAGCCATTCCCATATCCTCCTCCGATTCGAAACCCTCGTCTCTCTCTCTCTCTCTCTG
TGTGCCGGATTCCATGGTGACAGCGGGGAGCAGCCGAGGAGGAAGGGTGGGAGGGGCCGGAAGGCGCTAACGGCGGTGCTGGACAACGACGCCAACATCT
CCGCCGGGAAGGCCGACGGCGACGGTGAGCTCAGGCAGAAGATGCAAGATAGCGACGGCGCGCCTCCTTCCCCATAGTGGCGGCATGCACAAGCAGAGGG
AGGAAGGGCGGCCGCAGCGTCGGCGATATGCAAAGGGAGGGAGGGGCGGCAGGGCAGGGATGGTGCGGCTAGTGGGGAGAGAGGGGAAAAAGTTGGTGGG
GCCCACGGATGGCCAGTGGCTAAGGGTGGCCAAAGGCTGGCTAAGTTTGGCTAGCTCGAGTCCATGCTTGGCCATGGCTATCTTTTGTCAAGTGGGATAG
CCATTCTACTGGAGTGTGGCTATCTTTTTGCTCAAAGTAGCTAAAATTTAGTTTGGAGAGTGGAATGGAGAGGCTGTTGGAGATGCTCTAAAGAAATGGC
TGGAGCACTGCAGTGACAGTTGAGGAGAACATGCGAGGGCTCCGAGCAATGATCATTTGCTTACACATCATCCATAATTTTTCTTTCCTACGATAGAGAT
CATTTTTTCTTACCCTAGGATAGTGATCTATTTTTCTCAGTAGCTATATGTGCTTGGAAATGCAGAGGAGTTGATTGAACGAGGAACGCCAAAGGCAAGA
TTCATCTGTATCTTTGTTAAACCTAGTAATGGAGCCAATGCCATTGTTGAGTATGGATGTACAACGGATAGCATTTTTCGGTGGTTGGCCACTTTTTTAC
AGCATACATACCATAGGCAGCACTCGGGCAGTGCAACCGTCAGTGGCAGAGCTCAAGTTACAGCCCGATCTGCTCAGGAGTTGGCTCAGCAGTTGGTTAA
ACCCCATAATTCAAACTAATAAAAATTTACTACTGTCAGCCGAACTAGCTAGCATAGCATATTTTAGTTGTCACTACTATAAGAAACAAATATATCCTCT
TTAACATTCAGACATTCAGATATGCTATTTTTTCATAAACTTTTCTACAATACAATTGTATACAAATCGAG