Detailed information on CNT30117918


BLAST search results

BLAST vs Swiss-Prot:
sp|O23254|GLYC4_ARATH, E-value = 4e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697287Oryza nivaraOryza sativa27.4787.2899.6247forward
CNT30524209Oryza nivaraSetaria italica37.4918.1789.91337forward
CNT3070360Oryza nivaraQuercus suber16.9153.3380.26152forward
CNT30709157Oryza nivaraGlycine max27.0338.5186.42243forward
CNT30179070Oryza nivaraSecale cereale28.5952.3492.61257forward
CNT30558965Oryza nivaraActinidia chinensis12.6833.9386.84114forward
CNT30248419Oryza nivaraAvena sativa13.7927.3788.71124forward
CNT30312370Oryza nivaraCamelina sativa8.939.891.2580forward
CNT3074841Oryza nivaraBrassica juncea16.1329.2982.76145forward
CNT30650801Oryza nivaraRosa chinensis27.1418.5786.07244forward
CNT30714749Oryza nivaraMalus domestica golden13.1350.8685.59118forward
CNT30365067Oryza nivaraSorghum bicolor27.4740.8989.07247forward
CNT30620724Oryza nivaraCajanus cajan26.2536.7683.05236forward

Expression of CNT30117918

Peptides detected in this lncRNA

>peptide 1 (70 aa)
SQAKRAKIPENKVVLSSISHHFVALAHKILANGDSVGLDLLCVGLESRCHGLLQSNSKGCNLVVVRATLQ*

>peptide 2 (81 aa)
MTAKEVKFSEAMSSMPLRCRRFSRSRRSWTSGSAAASGVSPHDATESMAAVVAAARREERGVVGRGGEEGIYSGGGEEGARA

Sequence

>CNT30117918
CCAGTCAAGCCAAGAGGGCGAAGATCCCAGAGAACAAGGTGGTTCTCAGTTCCATCAGTCACCATTTTGTAGCCCTTGCTCATAAGATACTTGCCAATGG
CGACAGCGTTGGCCTTGACCTGCTTTGCGTAGGCCTTGAATCCAGGTGTCATGGTTTGCTGCAGAGCAACAGCAAGGGCTGCAATCTGGTGGTTGTGAGG
GCCACCTTGCAGTGACGGGAACACTGCGAAGTTGATCTTGTCCTCGTAGTCATAGACAGCACCCTCAGGCTGGCCCTTCTTGGGAGGCTTAGGGCCCTTC
CTGTAGAAGATCATGCCAGCTCTTGGTCCTCGGAGGGACTTGTGCGTGGTGGTGGTAACCACATCACATCCCTCGGGTACGCGCTGCCGCCGCAGATGAT
GAGCTTGGGGCGGAAGTCGAGCGCCTTCTCCTCCAGCTTCTCGTAGTCGATGTACCCCGCGGCGAAGTTGGCCGGCGAGCCGGAGTAGGGCTGCACGTTG
ACGCCCCACGACGCGGCGTCGAGGCGGAACGCGGCGAGGGCGCGGTCGCGGCACAGGTTCTCGATCTCGTCGATGACGTCGTTCCCGCCGTAGTAGCGCG
CCCCGGGCATCCCCTCGGAGTACTTGTTGGTGAGCGCGGAGCCGAGGGCCTCCATGACGGCGAAGGAGGTGAAGTTCTCCGAGGCGATGAGCTCGATGCC
GCTCCGCTGCCGCCGCTTCTCCCGCTCGAGGAGGTCGTGGACGAGCGGGTCGGCCGCGGCGAGCGGGGTCAGCCCCCACGACGCGACGGAGTCCATGGCG
GCGGTGGTTGCGGCGGCGAGGCGGGAGGAGAGGGGAGTGGTAGGGAGGGGTGGAGAGGAGGGGATATATAGCGGAGGAGGAGAGGAGGGCGCGCGTGCA