Detailed information on CNT30117882


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL2|NLT2B_ORYSJ, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697724Oryza nivaraOryza sativa41.6124.5997.79181forward
CNT30676413Oryza nivaraSetaria viridis30.836.3189.55134forward
CNT30524155Oryza nivaraSetaria italica33.7932.4589.8147forward
CNT30247616Oryza nivaraAvena sativa28.7412.8388125forward
CNT30471439Oryza nivaraSaccharum spontaneum33.7955.2693.88147forward
CNT30136219Oryza nivaraLolium perenne28.2820.4388.62123forward
CNT30367564Oryza nivaraSorghum bicolor20.2315.396.5988forward
CNT30371462Oryza nivaraOryza glumipatula4010.4198.85174forward
CNT30151138Oryza nivaraBrachypodium distachyon32.6447.9785.21142forward
CNT30104730Oryza nivaraOryza rufipogon75.1795.3496.33327forward
CNT30498573Oryza nivaraDigitaria exilis33.5630.6187.67146forward

Expression of CNT30117882

Peptides detected in this lncRNA

>peptide 1 (97 aa)
GAVDGGADGVGDADAALGGDAGGIAGVEAADAAGHVLEAVAGGAAVGGAEAGRHGGVDLAAADGGHGGVWARQEQSRCHEGDQHQLCTGHLDLGRVC*

>peptide 2 (96 aa)
MLTPHLEGMLAALPALRPLMLPATFLRQLQAVRRSAVLRQGDTAELTWPQLMAAMVVCGPARSRAAATRATNTSCARAISILVVCADDRSTCCCCW*

Sequence

>CNT30117882
CTGGAGCAGTCGATGGAGGGGCTGATGGTGTAGGGGATGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCATTGCCGGCGTTGAGGCCGCTGATGCTGC
CGGCCACGTTCTTGAGGCAGTTGCAGGCGGTGCGGCGGTCGGCGGTGCTGAGGCAGGGCGACACGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCAT
GGTGGTGTGTGGGCCCGCCAGGAGCAGAGCCGCTGCCACGAGGGCGACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACGAT
CGATCGACTTGCTGCTGCTGCTGGTGAGATCGATCGATGAGAATTCCCGGGAATGTAGGGGGCTTTAAATAGCTATTATTTCATCTGTGCCGATGCATCG
ACCAAGTCAAATGTAGCTACTACGCGGAATAGTCC