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Detailed information on CNT30117878


BLAST search results

BLAST vs Swiss-Prot:
sp|P32112|SAHH_WHEAT, E-value = 2e-94

BLAST vs NONCODE:
NONBNAT006042, E-value = 9e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675638Oryza nivaraSetaria viridis10091.0993.33450forward
CNT30702258Oryza nivaraQuercus lobata36.6735.1186.06165forward
CNT30376211Oryza nivaraArabidopsis thaliana77.7848.4185.43350forward
CNT30619260Oryza nivaraSesamum indicum78.2233.0583.81352forward
CNT3020603Oryza nivaraCitrullus lanatus77.5622.5582.52349forward
CNT3072357Oryza nivaraQuercus suber58.8925.888.68265forward
CNT30380227Oryza nivaraManihot esculenta33.7836.4590.79152forward
CNT30402445Oryza nivaraBeta vulgaris44.6745.2787.56201forward
CNT30628366Oryza nivaraVigna unguiculata20.446.4484.7892forward
CNT30200315Oryza nivaraPisum sativum24.2221.1289.91109forward
CNT30505192Oryza nivaraNicotiana attenuata37.5629.9185.21169forward
CNT30709695Oryza nivaraGlycine max34.4446.4191.61155forward
CNT30543653Oryza nivaraBrassica napus77.3350.4385.34348forward
CNT3076654Oryza nivaraBrassica juncea22.6721.8492.16102forward
CNT30261371Oryza nivaraBrassica rapa71.3376.7983.49321forward
CNT30612558Oryza nivaraArabis alpina68.4481.784.74308forward
CNT30607325Oryza nivaraGossypium raimondii33.5611.7190.73151forward
CNT30231757Oryza nivaraAnanas comosus21.1136.1289.4795forward
CNT30720770Oryza nivaraTriticum spelta4231.592.59189forward
CNT30365203Oryza nivaraSorghum bicolor23.3348.8492.38105forward
CNT30358660Oryza nivaraLactuca sativa43.1135.0881.44194forward
CNT30705212Oryza nivaraPrunus avium39.1147.8384.66176forward
CNT3021984Oryza nivaraPopulus trichocarpa10021.0486.44450forward
CNT30329805Oryza nivaraDioscorea rotundata67.1151.4588.41302forward
CNT30103876Oryza nivaraOryza rufipogon10099.3499.33450forward
CNT30723539Oryza nivaraLupinus angustifolius7827.5783.48351forward

Expression of CNT30117878

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MLQTMALFFIFLMWSTIMMSLLPVVVTKMSASETTSSKVRTWRPSIRAWRAQMGSISVTMTRAPACLRAAAQPLPTSP*

>peptide 2 (45 aa)
WLVNEQDMTKLGWPVAHPRFMRRPSARTMMPVLVSRPSMSISLSK*

Sequence

>CNT30117878
TGGTTAGTGAATGAGCAGGACATGACAAAACTGGGGTGGCCAGTAGCGCACCCAAGGTTCATGAGACGACCCTCAGCAAGGACAATGATGCCAGTGTTGG
TCTCAAGGCCGAGCATGTCAATCTCATTGTCAAAGTGACCAATGTTGCAAACGATGGCATTGTTCTTCATCTTCCTCATGTGGTCAACCATTATGATGTC
CTTGTTGCCAGTGGTGGTCACAAAGATGTCAGCCTCCGAGACAACATCTTCCAAGGTGAGGACCTGGAGACCCTCCATAAGGGCCTGGAGGGCACAGATG
GGGTCAATCTCAGTAACGATGACACGGGCACCAGCCTGCTTGAGAGCAGCAGCACAGCCCTTGCCAACATCACCATAACCGCAGACCACGGCAACCTTGC
CAGCGATCATAACATCAGTAGCCCTCATGAGACCATCAGGGAGAGAGTGG