CANTATAdb - search

Detailed information on CNT30117877

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000279, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690513	Oryza nivara	Oryza sativa	50.99	25.18	99.73	747	forward
CNT30552380	Oryza nivara	Oryza glaberrima	95.02	92.12	99.28	1392	forward
CNT30110178	Oryza nivara	Oryza longistaminata	62.66	48.47	99.46	918	reverse complement
CNT30100012	Oryza nivara	Oryza rufipogon	95.02	54.95	99.71	1392	forward
CNT30574808	Oryza nivara	Oryza barthii	88.33	93.5	99.38	1294	forward

Expression of CNT30117877

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MISISTMHMHNICDAYCIKFLENMYVCRPVVVNCK*

>peptide 2 (41 aa)
MWFSSSFRNPSLLFYCCSSGSKVILLELSFSTLSLVDCSPS*

>peptide 3 (65 aa)
KAHLDHLPLLSFSRSPLLSLTFSPAPPLPRQRQRPPLRRLPHPTPATPLAVAGLNQLLGSLLLCP*

>peptide 4 (29 aa)
KSPPRPPSSSLFFSFSPSLPHVLSSAAAS*

Sequence

>CNT30117877
GAAAAGCCCACCTAGACCACCTTCCTCTTCTCTCTTTTTCTCGTTCTCCCCTTCTCTCCCTCACGTTCTCTCCAGCGCCGCCGCTTCCTAGGCAGCGCCA
GCGACCTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCTTACTTCTCTGCCCCTAA
GCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCCAGGCCCCTACCGCTGGA
TCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATTCTACCGTGATTGAAAAATATGTGGTTCAGCTCCTCCTTCAGAAATCCAAGTCTTC
TCTTCTACTGCTGCTCTTCTGGATCTAAGGTGATTTTGCTAGAACTGAGCTTCTCCACCTTGAGCTTGGTTGATTGTTCCCCCTCTTGAACTGAACCCCC
TGCTCTACTTGGAACTCAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATACTTGACTGCTTCCTGACAGGATCTGCTACTGGTGATTCTCTTCC
TCCTCTTGAGACTAATCCTCTTTCTTGATTTTCGCTCTATCTTGCTTCTTGACCTGAGTTTCATCTCCTCCCATAGTTGGAGTTCATCCAAGAACTGAAC
ACCTCTACTTTTCCTTCAGATTTGGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATTGGTTTGAGCTGGACTTCAG
TTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTCCTAAGCTTGGTTCTATGATTCTAACTACTACTGCCGCAGCTGCTGCTATTGCTC
TACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGCTTGGTTGATATATATGTGAATTTGGTGAAGACTA
GGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAATGTGGGATTTCACTAAATTTTTCTAG
TTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCTAAAATTGAAGTTTACTCTGAGATTAGGGACTGATTTGTAATTGT
TCTAGAACTCAAGAGTTTTTCTGAAAACTAAATAATTATTGAATCTTTGACTGAGATGGTTCAGTTTATGATATGATATCCATAAGCACCATGCATATGC
ACAATATATGTGATGCATACTGTATAAAATTTCTAGAGAACATGTATGTATGCAGACCTGTAGTGGTAAATTGTAAATAAAGAACTGTGATTTCTACTGT
GCACATGTGTACCTCGCTTCATAACAACTAATCTACGCTATAGTTTAACTAAAACTAAATTATCC