Detailed information on CNT30117872


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697318Oryza nivaraOryza sativa99.6999.3899.06320forward
CNT30676942Oryza nivaraSetaria viridis35.8323.6198.26115forward
CNT30524376Oryza nivaraSetaria italica35.8319.398.26115forward
CNT30297243Oryza nivaraTriticum aestivum34.5837.2595.5111forward
CNT30439786Oryza nivaraAegilops tauschii34.5831.5395.5111forward
CNT30662749Oryza nivaraTriticum dicoccoides33.9639.3595.41109forward
CNT304300Oryza nivaraZea mays35.8317.8394.78115forward

Expression of CNT30117872

Peptides detected in this lncRNA

>peptide 1 (47 aa)
SFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

Sequence

>CNT30117872
GTCCTTCCTATCAGAAGATCAGAATGAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTC
AAACTCCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGCTGGGCGTCCTCTCGGCG
GCGCCGGAGATGACGGTGAGCAGGTTGATGGGGATGCTGTTGCCGAAGTAGTTGAGGGTGTTGCCGTCCAGGAGGAGGGCGCCGGTCTGCATATACCATG
AGTGAGTTCACTTCAGTTCAG