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Detailed information on CNT30117868


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697441Oryza nivaraOryza sativa94.8182.3297.47475forward
CNT30110139Oryza nivaraOryza longistaminata67.86100.2997.94340forward
CNT30104288Oryza nivaraOryza rufipogon10082.8199.2501forward

Expression of CNT30117868

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVTLSSVSAIYYGDIRLVLQSSPFIQKLISYLSIVSCCFSSA*

>peptide 2 (29 aa)
ATLLCILVQLLVCLASEMRWVGDGDIEFC*

>peptide 3 (36 aa)
MMFGAMVDLNYHPVVNFCGLKCEDMCTRLCELICNMV

Sequence

>CNT30117868
GCTACACTCCTATGCATTCTAGTTCAGTTGCTTGTTTGCTTGGCCAGTGAAATGAGGTGGGTTGGGGATGGTGACATTGAGTTCTGTTAGTGCAATATAT
TATGGGGACATCAGATTAGTGTTGCAAAGTAGCCCTTTCATTCAAAAACTAATATCGTATCTGTCGATTGTTTCTTGTTGTTTCTCTAGCGCATAAAAAA
ATAATCTAACATATGGTACTATCCTATCAGGTTGCTGTGCTCCTCCCCATCACCCTCGGGCAGGTGTTGATATAAGCTGTCTTAGTCTCCTTTATTATCT
TATGCACTGTGATGAACTCCATCTACTTATTTTAGTTGTGTTGATGCTTCTATGAGCTTACTGTCGTGTGGTGGACTTGGTTATGTAAAATGATGTTTGG
TGCTATGGTGGACTTAAATTATCATCCTGTGGTAAACTTTTGTGGACTTAAATGTGAAGATATGTGTACTAGGTTGTGTGAACTTATTTGTAATATGGTG
C