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Detailed information on CNT30117865


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103617Oryza nivaraOryza rufipogon19.583.4197.24181forward
CNT30574635Oryza nivaraOryza barthii20.1564.2691.44187reverse complement

Expression of CNT30117865

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSSLPTNIAWGIFHTNTWYLDYWWHTRPCIK*

>peptide 2 (70 aa)
MSEAAYRACCVNLFRYSCIDIKPCLSLRNSFFFILITTVGMKVSRPKTTLKFILEIVQRIIKIQVRASNN*

Sequence

>CNT30117865
AGGACAGTAACTGGTTTAGAGTTTATGGTAAGCATACCCATTAAGATGTTAGGGTCCTGCTGAGCTTCTTCTGCTCTGATATGGTGTACCTAACCATGTT
CAAAATTTGGTCCGCCTTTAATGATTGGAGGATTTTTCTTTATAAAGCCTGAGATAGGTTTTTGATTGGAAGTCTGGGCACTGTGTTTTGGCGATTGGGG
CATTGCCTAGCGAAATGTCCAGTCTTCCCACAAACATAGCATGGGGAATCTTCCATACTAATACATGGTATTTGGATTATTGGTGGCATACCCGGCCTTG
TATTAAGTAGAGATGGCTTAAAAGGATAGGGCTTCCGAATCTGTTGCGGATTTTTAGTTGGTGATTGTCGTTGAAGATTCATTCCTCGCTTACAAGGTCC
TTTCATTATCTTGCGGTCATTCTCTAGCCTGACCACTTTATTGACTAAGCTTTGAAAAATTTCATGATTTTAGCCGATCATCAGTCCTCGTAGCTCATAG
CATAATCCTTCTATAAACCTTTCAATCTTTTCTGTTTCATCTTGAATGTCCGAGGCAGCATATCGAGCATGTTGTGTAAATTTGTTTAGATATTCTTGTA
TTGACATAAAACCTTGTCTCAGTCTTCGAAATTCATTCTTCTTCATTCTAATTACTACAGTGGGTATGAAGGTGTCGCGTCCCAAAACGACTCTAAAATT
CATCCTCGAAATTGTGCAAAGAATAATTAAAATTCAGGTGAGAGCCTCCAACAATTAAAATGTGCAAAGATAAAAGTCAAATGAGGCTTGGAGGATTTTT
GTATATTTCCTAAAAGCCTAAAATGTGTAAATAAATTTTAGTGGAATTTTCAGAGCACAAATAATAATTGAAAAGAAATAAACAAAGTTAAAATGGTTTT
ATAAAAAGAAAAACCCTAAAAGAAGTTC