CANTATAdb - search

Detailed information on CNT30117852

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001725, E-value = 3e-175

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697208	Oryza nivara	Oryza sativa	74.26	44.55	99.05	629	forward
CNT30553350	Oryza nivara	Oryza glaberrima	47.7	63.82	98.51	404	forward
CNT30596942	Oryza nivara	Oryza meridionalis	48.64	37.45	94.66	412	forward
CNT30371382	Oryza nivara	Oryza glumipatula	46.64	56.92	95.95	395	forward

Expression of CNT30117852

Peptides detected in this lncRNA

>peptide 1 (64 aa)
ERFSCSPSRRTSCALPPPLLFLSSPAPPLVQPSPVATVVVVRSRSLEGGREGREEQEGRKEGEI*

>peptide 2 (38 aa)
MMVWIVWFISVLTFLITACRDVRIFRGDSTKISNNFRT*

>peptide 3 (74 aa)
SDSPVALAAAPPALCRRRCCSSLHRRRRWCSRRRSPQSSSSVAGRWKEGEKAEKNRKEGKKGKFDRRREIWGIW*

Sequence

>CNT30117852
GAGCGATTCTCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTCTCTTCACCGGCGCCGCCGCTGGTGCAGCCGTCGC
CGGTCGCCACAGTCGTCGTCGTCCGTAGCCGGTCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAAGAAGGGGAAATTTGATAGAA
GAAGGGAAATTTGGGGAATTTGGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTAGGTACCTAATGACATCGATCGGCATGGGGCG
GGAGTAGCACCCTTGGACTACACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTTGCTCAGCATAAGTTTTGCATAGAACTTGTAAA
GGTCATTTAAGGTTCTGATTCTTATTTTTCACGTGGGATTTGTGGAGCTATGATGGTTTGGATTGTGTGGTTTATATCGGTATTGACCTTTCTTATAACT
GCCTGTCGTGATGTCCGTATTTTTAGGGGAGACTCTACCAAAATTTCTAATAATTTTAGGACTTAGTTTTTGAGTGTATTTTGGTGTGGCATTCTAGGTA
CGTGGTTACCTGGGGTGTTACATCTTATGTGAGTTTGGTTCGTGGCTTTAGGCTACCTACCTCATGTATAAATAGAGAGGGAGCGTGAGGCCTCCCGGTA
TCGTTTTTGAGAGTATTGAGTTGTAAGTTTAGTTAGGGTTTCGAGTTTAGTCGAGATTTTCGTGAGGAGTGCTATTGTTGAACTTTTTAAACAGATACTT
GGATTACCAAATTTGGTCATTAACAAACACAGAGAGAAGTAATAAAG