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Detailed information on CNT30117847


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 6e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517675Oryza nivaraJuglans regia22.8435.4383.18214forward
CNT30403515Oryza nivaraBeta vulgaris19.6471.685.87184forward
CNT30710214Oryza nivaraGlycine max29.9992.4384.34281forward
CNT30220716Oryza nivaraHordeum vulgare14.4159.2191.11135forward
CNT3075316Oryza nivaraBrassica juncea20.765.3286.08194forward
CNT30611949Oryza nivaraArabis alpina12.734.3988.24119forward
CNT30606894Oryza nivaraGossypium raimondii22.256.9981.73208forward
CNT30716312Oryza nivaraMalus domestica golden19.7438.8786.49185forward
CNT30721658Oryza nivaraTriticum spelta22.3150.3690.91209forward
CNT30619808Oryza nivaraCajanus cajan19.9631.4383.96187forward
CNT30360524Oryza nivaraLactuca sativa17.1825.1284.47161forward
CNT30106559Oryza nivaraOryza longistaminata18.1475.8998.82170forward
CNT30147962Oryza nivaraBrachypodium distachyon31.9188.290.64299forward

Expression of CNT30117847

Peptides detected in this lncRNA

>peptide 1 (57 aa)
RQTTHLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

>peptide 2 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 3 (47 aa)
MKWILGLGAQCRGSGGRCHRWPHCRARQRHRCAQGGSGWRPEGTGTR*

Sequence

>CNT30117847
CGACAAACCACTCACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATC
GAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGC
ACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGC
GCGGCGAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCG
TCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCGCACTT
GGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAG
GAAAGCATGAAGTGGATCCTCGGGTTGGGCGCTCAATGTCGAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCGAGCAAGACAGCGACATCGGT
GTGCTCAAGGAGGGAGTGGGTGGAGACCTGAGGGGACGGGTACACGGTGAACCCGAGCTTGGACTTCTTGCCATAGTCCACAGAGAGACGCTCAAGGAGA
AGGGAACCGAGACCGGAGCCCGTTCCTCCTCCAACAGCGTTGAACACAAGGAAGCCCTGGAGACCAGTGCAGTTGTCGGCAAGCTTCCTGATGCGGTCAA
GGCACAGATCAACAATCTCCTTGCCAACTGAAACGAA