Detailed information on CNT30117829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677187Oryza nivaraSetaria viridis26.0453.9892.31156forward
CNT30436120Oryza nivaraAegilops tauschii27.3833.2795.12164forward
CNT30134938Oryza nivaraLolium perenne22.0424.2689.39132forward
CNT30353463Oryza nivaraEragrostis tef27.0511.7293.83162forward

Expression of CNT30117829

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSSQESQCTAVTKDSILVKCNAAKVTHLLNLVAYM

>peptide 2 (87 aa)
MLSREVLDVLVVHQALGEVLEELAVLLLDVEADGHGLVEELADLLKVLLDKTPGCHRRRANALLSPKTAFLLSVMLQRSHIFSTLLPT

>peptide 3 (85 aa)
MVCVCFCFPTPCTSCCRGRFSMSLLFTRPLEKSLRSLPCSFWMLRQMVTAWWRNSPICSKSFSTRPLDVIAGEPMHCCHQRQHSC*

>peptide 4 (93 aa)
MRLATKPEAAAGWGRAFYETYHLDGQTKSVTQGQLVPRKKMTTTAVHESTAGRRLAAVGPWFVCVFVFLLLVLHAVEGGSRCPCCSPGPWRSP*

Sequence

>CNT30117829
AGGTAGGCAGAAATCAAACGGATTGATTATTGGCAAATACTTGACATTCCATGATTCCAAAAGGCACAGCTCCTAGAAATTAGAAACAAGAGGAGGAAAA
AAACCGATGGGGGATGAGGTTGGCAACCAAACCAGAGGCAGCAGCAGGGTGGGGGAGAGCGTTTTATGAAACCTATCATCTCGATGGGCAGACAAAATCC
GTAACACAGGGCCAGCTTGTGCCGAGGAAGAAGATGACGACGACGGCGGTCCACGAGAGCACAGCTGGTCGACGATTAGCGGCGGTAGGACCATGGTTTG
TGTGTGTTTTTGTTTTCCTACTCCTTGTACTTCATGCTGTCGAGGGAGGTTCTCGATGTCCTTGTTGTTCACCAGGCCCTTGGAGAAGTCCTTGAGGAGC
TTGCCGTGCTCCTTCTGGATGTTGAGGCAGATGGTCACGGCCTGGTGGAGGAACTCGCCGATCTGCTCAAAGTCCTTCTCGACAAGACCCCTGGATGTCA
TCGCAGGAGAGCCAATGCACTGCTGTCACCAAAGACAGCATTCTTGTTAAGTGTAATGCTGCAAAGGTCACACATCTTCTCAACCTTGTTGCCTACATG