Detailed information on CNT30117813


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL2|NLT2B_ORYSJ, E-value = 3e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30444120Oryza nivaraAegilops tauschii20.1918.7886.7583forward
CNT30682526Oryza nivaraTriticum urartu20.1915.9687.9583forward
CNT30103942Oryza nivaraOryza rufipogon72.75102.0597.99299forward
CNT30578036Oryza nivaraOryza barthii73.48101.3493.71302forward

Expression of CNT30117813

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MLTPHLEGMLAALPALRPLMLPATFLRQLQAVRRSAVLTWPQLMAAMVVCGPARSRAAATRATNTSCARAISILVVCADDRSTCCCCW*

>peptide 2 (89 aa)
GAVDGGADGVGDADAALGGDAGGIAGVEAADAAGHVLEAVAGGAAVGGVDLAAADGGHGGVWARQEQSRCHEGDQHQLCTGHLDLGRVC*

Sequence

>CNT30117813
CTGGAGCAGTCGATGGAGGGGCTGATGGTGTAGGGGATGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCATTGCCGGCGTTGAGGCCGCTGATGCTGC
CGGCCACGTTCTTGAGGCAGTTGCAGGCGGTGCGGCGGTCGGCGGTGTTGACCTGGCCGCAGCTGATGGCGGCCATGGTGGTGTGTGGGCCCGCCAGGAG
CAGAGCCGCTGCCACGAGGGCGACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACGATCGATCGACTTGCTGCTGCTGCTGG
TGAGATCGATCGATGAGAATTCCCGGGAATGTAGGGGGCTTTAAATAGCTATTATTTCATCTGTGCCGATGCATCGACCAAGTCAAATGTAGCTACTACG
CGGAATAGTCC