Detailed information on CNT30117797


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT304371Oryza nivaraZea mays22.4268.8488.51148forward
CNT30721254Oryza nivaraTriticum spelta18.0321.3688.24119forward
CNT30344884Oryza nivaraEragrostis tef19.5556.0989.92129forward
CNT30371248Oryza nivaraOryza glumipatula54.3981.59100359forward
CNT30551757Oryza nivaraOryza brachyantha12.7328.0996.4384forward

Expression of CNT30117797

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTVSRLLPKGSLRCLERFSTGPSPVTAAGLGFGAGFLLKRETIFCAPVVGAAVA*

>peptide 2 (58 aa)
QGNHSAMSTMMKTTSRQFTQVANISQPQIQTLGPSYQKIRMNRFSNSSPNSTIIYTYI*

>peptide 3 (79 aa)
GKPFSNVNDDENHFETIYSGSKYFSATNPNTWSFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

>peptide 4 (37 aa)
MGRAPPSPQAHNSEGGGAVFRKGESVVGVCGGKGELV*

Sequence

>CNT30117797
CAGGGAAACCATTCAGCAATGTCAACGATGATGAAAACCACTTCGAGACAATTTACTCAGGTAGCAAATATTTCTCAGCCACAAATCCAAACACTTGGTC
CTTCCTATCAGAAGATCAGAATGAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTCAAA
CTCCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGCTGGGCGTCCTCTCGGCGGCG
CCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGTGCTTGGAGAGGTTCTCGACGGGGCCCTCGCCGGTGACGGCGGCGGGCTTGGGCT
TCGGGGCGGGCTTCTTGCTGAAGAGGGAGACGATCTTCTGCGCTCCGGTGGTCGGTGCCGCGGTGGCGTAGCGGGAGGAGCCGGCGAAGTTGAGCCGGGT
GCCGAGCATCTTGGATGGGGCGAGCGCCGCCATCGCCTCAGGCCCACAATTCAGAGGGAGGTGGTGCTGTGTTCAGAAAGGGGGAGAGTGTGGTGGGCGT
TTGTGGAGGGAAAGGAGAGCTAGTTTAAATGGATGGAAATGGGGATTTGGAGGATGTTGT