« Back to Oryza nivara search


Detailed information on CNT30117784


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676908Oryza nivaraSetaria viridis32.6948.899.02102forward
CNT30223766Oryza nivaraHordeum vulgare22.7614.6497.1871forward
CNT30353505Oryza nivaraEragrostis tef23.49.1297.2673forward

Expression of CNT30117784

Peptides detected in this lncRNA

>peptide 1 (47 aa)
SFLSEDQNEQVFKFISQLDDNLHVHLTHSSTLLKLLPSSSRVRLKLT*

Sequence

>CNT30117784
GTCCTTCCTATCAGAAGATCAGAATGAACAGGTTTTCAAATTCATCTCCCAACTCGACGATAATTTACACGTACATTTAACACATTCTTCCACCCTTCTC
AAACTCCTCCCTTCTTCTTCCCGGGTAAGATTAAAATTAACTTGAGGCCAGCCAGCGTCGCCGGCGGCGAGATGTTTACAGGCTGGGCGTCCTCTCGGCG
GCGCCGGAGATGACGGTGAGCAGGTTGTTGCCGAAGGGGTCGCTGAGGGTGTTGCCGTCCAGGAGGAGGGCGCCGGTCTGCATATACCATGAGTGAGTTC
ACTTCAGTTCAG