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Detailed information on CNT30117760

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000921, E-value = 3e-172

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695095	Oryza nivara	Oryza sativa	42.67	54.83	97.57	329	forward
CNT30555356	Oryza nivara	Oryza glaberrima	43.32	22.51	99.1	334	forward

Expression of CNT30117760

Peptides detected in this lncRNA

>peptide 1 (52 aa)
KLSSLFSLLAMASYHCRRPISLTGAIPANPSRHRACLDERNPFFPFPLFLHL*

>peptide 2 (38 aa)
EALLSFLSPCHGQLSLSSADLPHRSNTGQSLAPSSLPR*

>peptide 3 (49 aa)
MREIHFSPFPSSSTSESNLTGALSLLPVHDLPSAVPAISLTPFSGHCHP*

>peptide 4 (51 aa)
MDSNLWYFKHQIIRLPISDLFALEQGKLLFLSFEHNNPIFYISNIFCISHT*

Sequence

>CNT30117760
TGAAGCTCTCCTCTCTTTTCTCTCTCCTTGCCATGGCCAGCTATCACTGTCGTCGGCCGATCTCCCTCACCGGAGCAATACCGGCCAATCCCTCGCGCCA
TCGAGCTTGCCTCGATGAGAGAAATCCATTTTTCCCCTTTCCCCTCTTCCTCCACCTCTGAATCAAACCTCACCGGAGCTCTCTCTCTCCTCCCGGTTCA
CGACCTTCCATCCGCCGTTCCGGCTATTTCCCTTACTCCCTTTTCCGGCCACTGCCATCCCTAGGTGCGTTGCAGTCGGGAACACCACTGGCCGCCGGCG
TCACCGCCTCCTCGCCACCGGAGCCCGGCGCCCCCTCTCCTCCTCCTCTCTGTTCGACCGAGAAGAAAAAGAAGAAAGAGACGGGAAGAAGAAGAAGAAG
AAGAAGAAGAAGAGGAGAAAAAGAAAAAGAAAAAGGAATCCCTGACAGTAGAGTCTATTTTATATGGATAGCAACCTGTGGTATTTCAAGCATCAGATAA
TCAGGTTGCCTATTTCGGATTTATTTGCGTTGGAGCAAGGCAAGTTATTATTTCTCTCCTTTGAGCATAATAATCCTATATTCTATATCTCCAATATCTT
CTGCATTAGCCATACATGATTTTAAATGCATAACCTGAATATATAGCAAACCAGATATATGCTAGATTTTGCTTAGCCATGCCTAGTTAGATTATTCATA
AAATAAAATAAACTTAGATTGGGACAGTACGGTAGAAATGGTTGATTTCCGGGTGGCTAGTACTGTTCCAA