Detailed information on CNT30117718


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371140Oryza nivaraOryza glumipatula55.7955.5697.04270forward

Expression of CNT30117718

Peptides detected in this lncRNA

>peptide 1 (65 aa)
QEKRTCSPSRRTSCALLPPLLFLSSPAPPLVQPSPVATAVVVHSQSLEGGREGRDEQEGRKEGEI*

>peptide 2 (86 aa)
RRNAPVALAAAPPALCCRRCCSCLRRRRRWCSRRRSPQPSSSTASRWKEGEKAETNRKEGKKEKFDRRREIWGIWYLMTLIGMGRE*

Sequence

>CNT30117718
CAGGAGAAACGCACCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCTGCCGCCGCTGCTGTTCCTGTCTTCGCCGGCGCCGCCGCTGGTGCAGCCGT
CGCCGGTCGCCACAGCCGTCGTCGTCCACAGCCAGTCGTTGGAAGGAGGGAGAGAAGGCAGAGACGAACAGGAAGGAAGGAAAGAAGGAGAAATTTGATA
GAAGAAGGGAAATTTGGGGAATTTGGTACCTAATGACATTGATCGGTATGGGGCGGGAGTAGCACCCTTGGACTACACATTATTATTGTACACAACTGAA
ATTTAGTTTTAGACTATTTTTTTTGCTCAGCATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGATCCTTATTTTTCATGTGGGATTTGTG
GAGCTAGGATGGTTTGGATTGTGTGGATTATATCGGTATTGACCTTTCTTATCACTGCCTGTCGTGGATGTCTGTATTTTTAGG