Detailed information on CNT30117705


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30252009Oryza nivaraAvena sativa28.5718.9582.98188forward
CNT30103549Oryza nivaraOryza rufipogon102.1398.3996.13672forward

Expression of CNT30117705

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MLTSINCRSYSSVLRRRAWAWAARASCGSDRRSASPSCGCGRGMGAPAQASAWVAPASALAWVALASC*

>peptide 2 (40 aa)
MQSELSRSVSRGTLKAPVPSSFPAALLSYSPLPFLHLIATW

>peptide 3 (52 aa)
MWSRNGCSGSGFGLGGSGFGSGLGGTGFLLKWSMIFFLMGPQMVADAHNADG*

>peptide 4 (35 aa)
MFGMIKHANVHQLQIIFISSSPEGLGLGGTGFLWK*

>peptide 5 (30 aa)
MAPDQGMARCWRCGAERCSRSCQGRCREGR*

Sequence

>CNT30117705
TGGCTAAATGTAAATAAATTATTTTACCATATATAATTTCATTTGGGAGAGAAAAATATGCAAATAGTACAAACATCCCTGCTGATGCCCGATAATCAAG
TAGAAATTACACTCCTGTGCTGAGCAGGATCATCATGTTCGGCATGATCAAACATGCTAACGTCCATCAATTGCAGATCATATTCATCAGTTCTTCGCCG
GAGGGCTTGGGCTTGGGCGGCACGGGCTTCTTGTGGAAGTGATCGAAGAAGTGCTTCTCCTTCTTGTGGATGTGGTCGAGGAATGGGTGCTCCGGCTCAG
GCTTCGGCTTGGGTGGCTCCGGCTTCGGCTCTGGCTTGGGTGGCACTGGCTTCTTGTTGAAATGGTCTATGATCTTCTTTTTAATGGGACCGCAGATGGT
CGCCGATGCGCACAACGCTGATGGGTAGTGGGTCTTGCCGGCGACGGCGATGAAGGTGCCCTCCGACATTGGCACGATCTTGGATGGCTCCTGACCAGGG
CATGGCTCGTTGTTGGCGCTGTGGAGCTGAGCGATGCAGTCGGAGCTGTCAAGGTCGGTGTCGAGAGGGACGCTGAAAGCGCCGGTGCCGTCAAGCTTTC
CAGCGGCCTTGCTCTCGTACTCGCCATTGCCGTTCTTGCACTTGATCGCCACCTGGAG