Detailed information on CNT30117704


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696520Oryza nivaraOryza sativa99.2580.63100666forward
CNT30555063Oryza nivaraOryza glaberrima98.9697.3699.55664forward
CNT3068141Oryza nivaraLeersia perrieri22.6536.4580.92152forward
CNT30596955Oryza nivaraOryza meridionalis87.7883.5596.43589forward
CNT30106908Oryza nivaraOryza longistaminata37.710097.23253forward
CNT30103734Oryza nivaraOryza rufipogon93.8983.78100630forward
CNT30577979Oryza nivaraOryza barthii97.6282.1899.54655forward

Expression of CNT30117704

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MNKRRFSTHSLILVTVLAVLIVLAMPTALLGLSIGRRALGDPHGVQSTAAMQQDAQAVGPACNTNDPNVPSPCPPPLSPLSP*

>peptide 2 (36 aa)
MLKAFASFAPAGDFEPYMVTLLGDKAIRLYHENYDK*

>peptide 3 (44 aa)
MFHLHAHLHYHLSRHETWAKTKLCSRPSLPLLQQGILSHIWLHY*

>peptide 4 (32 aa)
MPTSTITSLAMKPGQKQSYAQGLRFLCSSRGF*

Sequence

>CNT30117704
GGATGGTCGGTATAAGAGATAGCAAGAAGGCAAGCTAAAACAAACCAGCTAAGCATAAGGTGAAGGGTAGATAAAATACAACGGTGAAGTTAAAAGAGAA
ACAGAGATGAACAAGCGAAGGTTCTCTACACACTCCCTTATCTTGGTGACTGTGCTAGCAGTTCTAATTGTTCTTGCTATGCCAACAGCTTTGCTGGGGC
TCAGTATAGGGAGGCGTGCTTTGGGTGATCCACATGGAGTTCAATCCACAGCTGCCATGCAACAAGATGCTCAGGCCGTAGGTCCTGCGTGCAACACAAA
CGATCCGAATGTTCCATCTCCATGCCCACCTCCACTATCACCTCTCTCGCCATGAAACCTGGGCAAAAACAAAGCTATGCTCAAGGCCTTCGCTTCCTTT
GCTCCAGCAGGGGATTTTGAGCCATATATGGTTACACTATTAGGTGATAAAGCTATACGTTTGTACCACGAGAACTATGACAAGTAAACGTATAGATTAA
CCAACATCTGAATTGTGACGAGAATTCGTACGTTCTTTCAGAGAATGTTGTACCTTGTGTTATATGGTGCATGTACCTCTATATAGTTGTGTTTGAATAA
AACGAAGACATGAATTTGGCGAGCCGACAGGAGTCATCTTGTTATTTGTTTTCTGTACTACGAAGTATGCA