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Detailed information on CNT30117690


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001876, E-value = 2e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692810Oryza nivaraOryza sativa72.2718.35100232forward
CNT30530127Oryza nivaraEucalyptus grandis43.9344.292.2141forward
CNT30378684Oryza nivaraArabidopsis thaliana57.3218.1192.93184forward
CNT30300480Oryza nivaraTriticum aestivum70.417.2598.67226forward
CNT3089382Oryza nivaraVigna radiata57.0140.1390.16183forward
CNT30540534Oryza nivaraBrassica napus65.4218.2990210forward
CNT30145113Oryza nivaraMedicago truncatula48.647.5691.67156forward
CNT30441777Oryza nivaraAegilops tauschii70.440.1498.67226forward
CNT3059907Oryza nivaraArabidopsis lyrata28.9718.2791.493forward
CNT30263944Oryza nivaraBrassica rapa35.514.6588.6114forward
CNT3018289Oryza nivaraZea mays70.48.7198.67226forward
CNT30606924Oryza nivaraGossypium raimondii65.1125.5589209forward
CNT3068455Oryza nivaraLeersia perrieri49.2248.7798.73158forward
CNT30627899Oryza nivaraDaucus carota65.7316.6391.47211forward
CNT30683192Oryza nivaraTriticum urartu70.422.3199.12226forward
CNT3058322Oryza nivaraAmborella trichopoda67.623.1690.32217forward
CNT30147990Oryza nivaraBrachypodium distachyon70.7214.9997.36227forward
CNT30577776Oryza nivaraOryza barthii35.8315.599.13115reverse complement
CNT3049694Oryza nivaraCucumis sativus33.3336.0389.72107forward

Expression of CNT30117690

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MELQEQLGAAMKAIINTEVAVNKVGIIKTPNHPM*

>peptide 2 (44 aa)
KILGISRFSFFNMLAEKPYLLRDGTSRAARGSDEGDNKYRSCGQ*

Sequence

>CNT30117690
GCAAGATATTGGGTATTTCTAGATTTTCTTTCTTCAATATGTTAGCAGAAAAGCCTTATCTATTAAGAGATGGAACTTCAAGAGCAGCTAGGGGCAGCGA
TGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCA
GTTGCAGAAGCGACCCCACAGGCTTGTACTTTCGCGTCTCTCTAAAATTGCAGTCATGGTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCAC
ACGTATTAACTAGAAAGATAA