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Detailed information on CNT30117673


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002200, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694192Oryza nivaraOryza sativa10032.9795.33643forward
CNT30371405Oryza nivaraOryza glumipatula92.696191.44596forward
CNT30102780Oryza nivaraOryza rufipogon85.5482.3490.55550reverse complement

Expression of CNT30117673

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVGCEHMVLRVVLMTIKDRFASYCCETLTVPTTSQRGQRLYLFYNMIHCGAPD*

>peptide 2 (51 aa)
MVHCGELCCAEGIVTASIRVLSSIATHGRHDVEAVSCGYSGTPLARVKLFE*

>peptide 3 (50 aa)
MIQEWCTVVSCVVQRVLSQPLFGYFPVSRRMVDMMLRLCLVGTVVHLWPE*

Sequence

>CNT30117673
GCCATGCTTAGAAACATTAGCACACAATTGGGATAACTAATGTTTCACTATCACTTATGGTTATATTTAATGGTAGCTCACGATGGTCAATCGTGATTGG
TTAATTAATTACTTGCCAACTAAAACTTGATAATGGTGGGTTGTGAGCACATGGTTTTGAGAGTCGTGCTCATGACAATTAAGGACCGGTTCGCGAGCTA
CTGTTGTGAAACATTAACCGTGCCAACCACAAGCCAGCGTGGGCAACGGCTTTACCTTTTTTATAACATGATTCATTGCGGAGCACCAGACTGAGAAGTG
GCGGAGATAAGCCCACGGGGGTCGCTGGGGAGTCCATGCCTTGTTTTATAAGGGGGTGATTATGATCCAGGAATGGTGCACTGTGGTGAGTTGTGTTGTG
CAGAGGGTATTGTCACAGCCTCTATTCGGGTACTTTCCAGTATCGCGACGCATGGTAGACATGATGTTGAGGCTGTGTCTTGTGGGTACAGTGGTACACC
TCTGGCCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTTATGGGCGAGTTGAGCAATGTTTTTCGTGATTAGTCTCACACCTCTCACAATAATTATG
GATGTTATACCTGGTAATAATTTGCTTAGCTCCTGGTTTGGAG