Detailed information on CNT30117644


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694266Oryza nivaraOryza sativa55.9467.8297.76984reverse complement
CNT30553641Oryza nivaraOryza glaberrima43.3868.6898.43763forward
CNT30371243Oryza nivaraOryza glumipatula50.4371.8294.81887forward
CNT30108528Oryza nivaraOryza longistaminata37.1899.2497.86654forward
CNT30100385Oryza nivaraOryza rufipogon71.6392.7297.621260reverse complement
CNT30575705Oryza nivaraOryza barthii84.4284.2397.981485forward
CNT30593965Oryza nivaraEragrostis curvula3.2420.2894.7457reverse complement

Expression of CNT30117644

Peptides detected in this lncRNA

>peptide 1 (71 aa)
RSDSPVALAAAPPALCRRRCCSSLRRRRRWCSRRRSPQPSSSAAGRWKEGEKAEKNRKEGKKGKFDRRRKI*

>peptide 2 (65 aa)
QERFSCSPSRRTSCALPPPLLFLSSPAPPLVQPSPVATAVVVRSWSLEGGREGREEQEGRKEGKI*

>peptide 3 (54 aa)
MAMTLCYLFVFRPIFKFMTLFMFHYSGCSVYIIQEPCVAMGVQFGSLFMILEKR*

>peptide 4 (46 aa)
MLLIRVSTHIQIHDVIHVSLFRMFCLHYSRTMRSHGSAIWIFIHDP*

>peptide 5 (37 aa)
MVWIMWFISVLTFLITVCRDVRIFRGDFAEISNNFRT*

>peptide 6 (31 aa)
MHKSCVCFTSSRLYLLSILYSLLCLIWFLGT*

Sequence

>CNT30117644
CAGGAGCGATTCTCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTCTCTTCGCCGGCGCCGCCGCTGGTGCAGCCGT
CGCCGGTCGCCACAGCCGTCGTCGTCCGCAGCTGGTCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAAGAAGGGAAAATTTGATA
GAAGAAGGAAAATTTAGGGAATTTGGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTACGTAATCCGTTTTAGTCTATAGTTGTTT
CTAATTTATATTTAAGACGATCTGTTTCCAGTTTTTTCGAATTTATTTTATATCGAACGCTAGGCTGAAACCGTATTTTCAAATCTGGTATTAAACCATC
AGGAATCAGGTTAGTTGTCCTAAATAAAGTTTGTAGTCATTGTCAATATCTTTCCAACGGTGCTAGTTTCACTCAATTCCGATAAACGGTTTAGGAGAAA
CAGCAAAAACAGTACTGCTGACCGGGTCCGGAAATCAGGACAGCAGTTCGTTTTTCCTTAATCTGGGATTTTCAGAGGCATAATCTGATTTTGTGCTCAA
CATGAAAGTTGTAGACAATTTTGTCTAGATATCCGAAGTTGTATTATTTGCTAGTTTCCGTTAAACAGTTTGTGAGTTACTCATAAAACAGTAATGGAAC
AGCTATAGGTTATTTAATACAAATCGGTAAAAGGTTTATATGTTCTAGGTTTCGATTTTAGTAAATATCCCCTGTAACCATCGTTAGTTGAATATAGTGG
TTTATGCGTAGTTTTGCTCCACAGGTGTGGAGGGTTCCAACATTGGAGGAGTTGAGTCGGAGTATCGAATGAGTTAAGGCAAGTACAAGACGGACTTACG
TGATGGACAAAACTGAGTTATTTTGTTTGGCTTTACTTGCATAATTATTATTCAATTGCTTGTTATTACTGATTGTATGGCTATGACGTTATGCTACTTA
TTCGTGTTTCGACCCATATTCAAATTCATGACGTTATTCATGTTTCATTATTCCGGATGTTCTGTTTACATTATTCAAGAACCATGCGTAGCCATGGGAG
TGCAATTTGGATCTTTATTCATGATCCTTGAGAAGCGCTGATCACACTTGCTCGGCTTACCGGTAATGCTAAGAGGATATTCACACCTGCCCGGGAGGGA
ACTACTATCTTTTGACTTCTTTGGTTTAAAAATAAAGTAAATCCAACCCTTCATGTTGGTTTCTTAATGCATAAATCATGCGTATGTTTTACTAGTTCAA
GATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACCCTTGG
ACTACACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTTGCTCAACATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCT
CATCCTTATTTTTCACGTGGGATTTGTGGAGCTAGGATGGTTTGGATTATGTGGTTTATATCGGTATTGACCTTTCTTATAACTGTCTGTCGTGATGTCC
GTATTTTTAGGGGAGACTTTGCCGAAATTTCTAATAATTTTAGGACTTAGTTTTTGAGTGTTTTGGTGTGGCATTCTATGTACGTGGTTACCTGGGGTGT
TACAAGAGCGCAATGAATTTTTTTCCTATAATTAAAAAGAATAAATATGTAATTATTGC