Detailed information on CNT30117629


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST005600, E-value = 1e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378690Oryza nivaraArabidopsis thaliana70.427.0891.67264forward
CNT3021444Oryza nivaraCitrullus lanatus21.3319.1891.2580reverse complement
CNT30598581Oryza nivaraFraxinus excelsior22.423.890.4884forward
CNT30360309Oryza nivaraLactuca sativa22.414.6189.2984forward

Expression of CNT30117629

Peptides detected in this lncRNA

>peptide 1 (35 aa)
KILGISRFSFFNMLAEKPYLLRDGTSRAARSRGKL*

Sequence

>CNT30117629
GCAAGATATTGGGTATTTCTAGATTTTCTTTCTTCAATATGTTAGCAGAAAAGCCTTATCTATTAAGAGATGGAACTTCAAGAGCAGCTAGGTCTAGAGG
GAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGCGATGAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGAT
CATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAAGCGACCCCACAGGCTTGTACTTTCGCGTCTCTCTAAA
ATTGCAGTCATGGTAAGATCTTGGTTTATTCAAATTGCAAGGACTCCCAAGCACACGTATTAACTAGAAAGATAA