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Detailed information on CNT30117618


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677847Oryza nivaraSetaria viridis5449.6995.47243forward
CNT30317753Oryza nivaraCorylus avellana46.4430.0384.21209forward
CNT30703567Oryza nivaraQuercus lobata43.1138.4281.44194forward
CNT30617135Oryza nivaraSesamum indicum47.1121.1485.38212forward
CNT3069058Oryza nivaraQuercus suber41.7821.4981.91188forward
CNT3042757Oryza nivaraPrunus dulcis47.1134.9882.08212forward
CNT30186872Oryza nivaraSecale cereale4843.2994.91216forward
CNT30219776Oryza nivaraHordeum vulgare33.3335.6396150forward
CNT3086297Oryza nivaraVigna radiata5019.3579.11225forward
CNT30553196Oryza nivaraOryza glaberrima55.1144.4499.19248forward
CNT30435717Oryza nivaraAegilops tauschii48.4435.9196.33218forward
CNT30656490Oryza nivaraTriticum dicoccoides50.2236.5793.36226forward
CNT3082467Oryza nivaraBrassica juncea47.7829.9980.47215forward
CNT30261175Oryza nivaraBrassica rapa40.4438.5681.32182forward
CNT30471244Oryza nivaraSaccharum spontaneum49.1123.0995.48221forward
CNT30679651Oryza nivaraTriticum urartu48.8939.1594.09220forward
CNT30348363Oryza nivaraEragrostis tef48.4439.1495.87218forward
CNT30357929Oryza nivaraLactuca sativa31.7831.9282.52143forward
CNT30645368Oryza nivaraCannabis sativa31.1142.385140forward
CNT30325970Oryza nivaraAsparagus officinalis43.7828.5584.77197forward
CNT30331117Oryza nivaraDioscorea rotundata45.1121.4480.3203forward
CNT30147953Oryza nivaraBrachypodium distachyon48.8925.3293.18220forward
CNT30496126Oryza nivaraDigitaria exilis4831.7693.98216forward

Expression of CNT30117618

Peptides detected in this lncRNA

>peptide 1 (37 aa)
DVLIKRENDSFDPTIHSLCTSRNNELVQFPQRNPKQR*

>peptide 2 (51 aa)
MRFTPPLLASRRIAGLVMPWMLSRSTFLCRFAPPLPRPLPPLPRPDMAYDA*

Sequence

>CNT30117618
CGGATGTACTAATCAAGAGAGAAAATGATTCATTTGATCCAACCATCCATTCACTTTGCACAAGCAGAAACAACGAACTAGTACAATTTCCGCAACGAAA
CCCTAAGCAACGCTAACGGCATCAGATCTGGATCGAGCACAGGGGGCCGGGAACTCAGCCGCCGAAGCCGTAGAGGGTGACGGCGTCGCGGATGACGTTC
TCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGCCCGGAGATGCGCTTCACGCCGCCCCTCCTCGCCAGCCGCCGGATCGCCGGCTTGG
TGATGCCCTGGATGTTGTCGCGCAGCACCTTCCTGTGCCGCTTCGCGCCGCCCTTGCCAAGACCCTTGCCTCCCTTGCCGCGGCCCGACATGGCTTACGA
TGCGTAAGAGCTCGAGGTGGAAGACGAAGACGATCTGGAGGATTTGGGGA