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Detailed information on CNT30117614


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 9e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30395219Oryza nivaraTriticum turgidum39.1949.6289.42397forward

Expression of CNT30117614

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

>peptide 2 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

>peptide 3 (87 aa)
FFLRPNALDFNPLNQRIHYLPRFDPIYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIKITPRIST*

Sequence

>CNT30117614
TTTTTTTTAAGACCAAACGCTTTGGATTTTAACCCACTAAATCAGAGGATCCATTATCTTCCTAGATTCGACCCAATCTATTGTATACGTAAATTTAAAG
TACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTACACTATACATAGCCAGAAATGGTTATATTTTGGGATTGAGGGAGTATT
TGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAAAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTATTGCA
AAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAA
CTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCG
TTGTTGTTGACGGGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCT
CCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGG
CCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCG
AGGTAGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGC
CGAAGAGCGCGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTTGGG
AGTTGGAGATGGC