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Detailed information on CNT30117611


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007369, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696265Oryza nivaraOryza sativa101.353.4798.18932forward
CNT30103319Oryza nivaraOryza rufipogon10056.398.37920forward

Expression of CNT30117611

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MPSSSHRPAYARPRSYRRHRRRRHTQSSPSTSPASRPRRSQPRPRDPTLIWLRLHKLVHFLDDPSMNA*

>peptide 2 (42 aa)
PLPNRAPLSNPNLSLSRGATALDRRRSAVVASVVSPPPISIA*

>peptide 3 (56 aa)
PSPIAPPSPTLISPSHAAPPPSTAAAPPLLHPSSRRHRSQSRDFLFLSRNRATLSP*

Sequence

>CNT30117611
CCCCTCCCCAATCGCGCCCCCCTCTCCAACCCTAATCTCTCCCTCTCACGCGGCGCCACCGCCCTCGACCGCCGCCGCTCCGCCGTTGTTGCATCCGTCG
TCTCGCCGCCACCGATCTCAATCGCGTGATTTCCTTTTCTTATCCCGAAATCGTGCAACCCTCTCACCCTAACCCTAATCTTGTCCCCGCCGACCGACGC
GCCGCCCCTCCCCGCTCGAGTCCATGCCGCCGCAAGTTCGCCGTCGCAGGCCGCGTCACCCGGATCAGCGTTGACGTCGCATGCCTTCCTCCTCACATCG
CCCGGCATACGCTCGTCCTCGGTCATATCGGCGCCACCGCCGTCGCCGTCACACGCAGTCCTCCCCGTCCACCTCGCCGGCCTCGCGCCCTCGCCGCTCC
CAACCTCGCCCACGAGATCCTACTTTGATATGGTTGAGACTTCATAAATTAGTACACTTCCTCGATGACCCTTCAATGAATGCCTAAATACTAGAGGGTT
TCTACTACTCTCTAGGGACAGCCATATATCTTTGAGAATATTGATTTTATCCCCCTATTTGAGTCATATACAGAGACTGCTGTTGACCTTGAATTTATCC
CACAGCATTTGTGTGCATGGAGATATACTGAAGTCTTTTTTTCCAGTTATTCACAAATATAATCTGGTACATTGAATATTCAGTTTAATCATATCAGATT
TTCAACAGAGAATGTTTGCTATGTATCACTAATGACCCCATTTCAACAAGGTTCTGCACAAATCTGAAGATAGAGTTATGATTTTCTCAAAATTAACCAT
GATGTTATCCTTCCTTGAACTATTCATGTAACTAATCGGATAGGATATATAGCTTCTATGCACATATTTATGCTTTTAAATCAACTGTAAGTTTCTTCCT
TGAACAGCTGCATTCTATCC