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Detailed information on CNT30117596

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002509, E-value = 5e-155

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691301	Oryza nivara	Oryza sativa	51.81	45.43	98.6	358	forward
CNT30109734	Oryza nivara	Oryza longistaminata	45.88	28.69	97.48	317	forward
CNT30104357	Oryza nivara	Oryza rufipogon	45.88	36.39	96.85	317	forward
CNT30576235	Oryza nivara	Oryza barthii	43.27	47.31	95.65	299	forward
CNT30603852	Oryza nivara	Oryza punctata	45.01	24.57	94.53	311	forward

Expression of CNT30117596

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MCVPTTDPGIGTDKHRRFPISKIGGRQTAYATSGFT*

>peptide 2 (42 aa)
MIGVRFHSRSRSPVDCLWHVNRALVLFCLPLLFSDSCWPALP*

>peptide 3 (67 aa)
MLLSATSMPRLPARPPLLILLSMLSNPQLQEVDPPMARMGSRMELQRPMELDFTEQSSPRVLKRSPC*

Sequence

>CNT30117596
CAGAAACCTCTCCCCGTTTCTCCCCTCTTATCACTCCTGCAGGTAAAAGCATCAGCTAGCTAATCCCCTTCTTCCTTCCTCCATTTGCCATTAGCAGTGG
ATATCTTTTCCCTCAAATCCTCACTCTACTACTCTAGTACTGCTGCTGCTACCACCATGTTGCTCTCGGCGACCTCAATGCCCAGGCTACCAGCAAGACC
TCCCCTCTTAATCCTTCTCTCTATGCTCTCCAACCCACAGCTCCAAGAAGTGGACCCCCCCATGGCTAGAATGGGGTCACGCATGGAGCTCCAGCGCCCC
ATGGAGCTCGACTTCACCGAGCAATCATCCCCTAGAGTGTTGAAGAGAAGCCCTTGTTAGTACGCTTGCGTACCTAACAAGATGATCGGAGTGCGGTTCC
ATTCTAGGTCTCGTTCCCCAGTCGATTGCTTGTGGCATGTCAACCGGGCCCTTGTATTATTTTGTCTTCCGCTGCTGTTCTCTGATAGTTGTTGGCCTGC
CTTGCCCTAATGTAAGCATTTAACTCTCTTAGCCTGAATTCATTCATGATATGTTGTGATTTGGCTATGTATGTGTGTACCAACTACTGATCCAGGGATT
GGTACTGATAAACACAGAAGATTTCCGATTTCCAAAATCGGAGGTCGACAGACGGCCTATGCTACTTCTGGATTCACCTAGGCACGAGAGG