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Detailed information on CNT30117582


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005669, E-value = 7e-170

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696163Oryza nivaraOryza sativa100.1444.9898.51739forward
CNT30554971Oryza nivaraOryza glaberrima45.1269.3898.2333forward
CNT30596307Oryza nivaraOryza meridionalis89.4383.6597.27660forward
CNT30370387Oryza nivaraOryza glumipatula59.3581.8797.26438forward
CNT30102296Oryza nivaraOryza rufipogon68.4399.4197.43505forward

Expression of CNT30117582

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPLGVLKIKGMLFMTMTCIMEDGMSRCMHGSGLVALSVNLEYWST*

>peptide 2 (29 aa)
MYAWEWSSSFVSEPGILEHLVTKVLLALA*

Sequence

>CNT30117582
AAGATTTGTAGCCAATCAACCTGAAAATGGTGACGTAGAGCACCACCATCAGCTCGGCTAGGAGGAGGACAGGGAGAGTAGCAAGGAGGACTGCCGGCTT
GGGGAAGAACTGGACCTGCAGGGGGAGGAGTGAAGCTCATTAGCTGCAAACTTGTGGGGGATCAATCAAGAAACATCACCCACCAACAGAACGGAGCAGG
AAGGGTACTAGAGGTGGAGTCGGGTCAGTGGGGAGTGCCAGCTAGTTTCGATTTGAACTACGAGGATTCAGATGCAAACATTTCTGGGCAAGCCAGTGAG
TTAAGTGGTGGTTTGGAGGATCAGTACTATGCCCCTTGGTGTGCTGAAAATCAAGGGGATGTTGTTTATGACTATGACATGTATTATGGAGGATGGGATG
AGTAGATGTATGCATGGGAGTGGTCTAGTAGCTTTGTCAGTGAACCTGGAATATTGGAGCACCTAGTGACCAAAGTATTGCTAGCTCTTGCTTGAAACTT
GTATTATTAATGGGTGAATGTGTAAGGCCCTGTTTCAGACTTTAGCCCTGCGTGGCATGGTATTGTAATGTTATCTGAACATTCTAGCTATTATTCTGCT
GCTATCTCTGATGTGGATCATTATTCGCTAGAGTGCGGCTATGGTGAATAATAATCCATGGACTAGTGACGTCATTTTGGTAATGACGGCGCGGGTCGTC
ACAGATTTCTTCTAGGTACTCATGTGCTTGCCCGTTTA