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Detailed information on CNT30117556


BLAST search results

BLAST vs Swiss-Prot:
sp|O65665|ERF60_ARATH, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696108Oryza nivaraOryza sativa41.7345.5599.72711forward
CNT30520536Oryza nivaraSetaria italica11.827.593.53201forward
CNT30708948Oryza nivaraGlycine max6.6320.783.19113forward
CNT30563605Oryza nivaraActinidia chinensis8.7431.585.91149forward
CNT30107803Oryza nivaraOryza longistaminata30.7559.7594.08524forward
CNT30150787Oryza nivaraBrachypodium distachyon4.6921.8696.2580forward
CNT30577660Oryza nivaraOryza barthii25.8893.0498.41441forward

Expression of CNT30117556

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MFWQSVWSLASTEAWSGPREAALSGKLSRAASPRRRYAAWS*

Sequence

>CNT30117556
CGACGCTAAATAATAATAGTAGTAGTAGTAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAATATTACAAGACATAATAATAATAATAATGC
TACTACTACTGTTTACAACCTGTAAGATCAGCAGTAGAAGGTAATAACAGACTTTAGAAGAGCAATGGACGCCACGGCCGGAGTAACTGACCAGTGACCG
GCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCCGGTAGCATCGGCGTCTCCGGTTGAGGAAGAACACCAACCAACCCTAGCATCTACAGAGG
AAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTATAAAACTGCTAATCCATGCCCGTCCGTGCGGTGCA
GAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGTGGTGGTGTTAATTGGCG
GCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCGGAGACAGAGGACTTCTTGGCGTTCTTGGCGGCGGCGATGTTCT
GGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGTGGAGCGGGCCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGCCGCGCCGCGTCGCCGCGGAGGCG
GTACGCCGCCTGGTCGTAGGCAAGCGCCGCCTCCTCGGCGGTGTCGAAGGTGCCGAGCCAGAGCCGCGTGCGGTTCCGCGGGAGGCGGATCTCCGCCACC
CACTTCCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTCTGCGGCCGCGGCGGCGTCGCCGCCGCCCCCGCCGCCGAAGCCGACGACGACGACGCCT
TCATCGGCTGCGCGCGCGGGCCGAGCGGGCCGGCCTGCGCCGCCTGCCGCTGGAGGTGAAGGCGGGCCTGGATGTAGTGCATCTGGGCCGGGCTGAGCTC
TGGCTGCTGGGCCAGCCCGCCACCGTACGCGAACGCGTGCGGGAAGGAGAATGGCGAGGTGGGACTAAACTGGGAACAAACCGGAGGCGAGCCGGAGGCA
TCTCGGATAAAAGGCTCGAGTGCTCTCATCAGCTCCTCCCCTGACAGATCTATAGCTGCAGCCATCTACTCACTCTTTTTTTTGGGATTTTTTTTTCTGA
TACTAAAACAGTAGTAACAAAGATTTGCCTGGTTCCGAATCCAAAATCAAGAACAGGCAGGAAAGAGGGAGAAATCGACAGCCACAGTAAAAAAACAGAT
GGCTTTTTGGTGGTAGATCTAGCAAGTGAGGTGTGGAAAAAGAACCCCTCTTGGCTACCAACCTAACACTAGAACACAAAGAAGATGAAAGAAAAACAGC
AGATCTGGGAGCCCTGGATCTAAAAGGCCCTGGGTCTCTCGCTCTCTGCAAGCAACCTAACCAAGAAACCGTAGAAGAACAGGTGGGGGAGCCAGAGGAG
GAAGAAGAAGAAGAGGGTTTCGAGAAAACTTTACCTTGAAGACGCTCGAAGTCGCTCAGATCTAAAGCTTTTCTTACCTCGCTCGAGCTCACGGTGGCTG
TGGGTGTTCGTGGGCTTGGAGATGGTGGCGGCGGCGGTGGGAGGATGGCTGTGGATCTGGGTGTGTGTGTGGGCGAAAGTGGGAATGGTGGGCGGGGAGG
TGTG