Detailed information on CNT30117538


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30576628Oryza nivaraOryza barthii88.8610097.7391reverse complement

Expression of CNT30117538

Peptides detected in this lncRNA

>peptide 1 (34 aa)
ICDDPRRHYQNDVTSPWIIIHHSRTLANNDPHQR*

>peptide 2 (48 aa)
MHTSTHPILHNTCHSHKQHPLDFQHTKGHSTDPPNHHLTHWLAQKCLHL

Sequence

>CNT30117538
ATCTGTGACGACCCGCGCCGTCATTACCAAAATGACGTCACTAGTCCATGGATTATTATTCACCATAGCCGCACTCTAGCGAATAATGATCCACATCAGA
GATAGCAGCAGAATAATAGCTAGAATGTTCAGATAACATTACAATACCATGCCACGCAGGGCTAAAGTCTGAAACAGGGCCTTACACATTCACCCATTAA
TAATACAAGTTTCAAGCAAGAGCTAGCAATACTTTGGTCACTAGGTGCTCCAATATTCCAGGTTCACTGACAAAGCTACTAGACCACTCCCATGCATACA
TCTACTCATCCCATCCTCCATAATACATGTCATAGTCATAAACAACATCCCCTTGATTTTCAGCACACCAAGGGGCATAGTACTGATCCTCCAAACCACC
ACTTAACTCACTGGCTTGCCCAGAAATGTTTGCATCTAAA