Detailed information on CNT30117531


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006895, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690379Oryza nivaraOryza sativa78.3359.5392.75828forward
CNT30553060Oryza nivaraOryza glaberrima67.0826.2892.38709forward
CNT30130271Oryza nivaraLolium perenne8.826.1286.0293reverse complement
CNT30103007Oryza nivaraOryza rufipogon10064.0299.531057forward
CNT30550983Oryza nivaraOryza brachyantha24.0377.9188.58254forward

Expression of CNT30117531

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MIRRCCGNHPQRLLPDGIDEKLVTLALPAYTMKCASSADGRGH*

>peptide 2 (34 aa)
MLMDWIDWWSSRSYYRCILNLLWWWGFGCTYLSS*

>peptide 3 (69 aa)
MYSEPAMVVGVRLHIFIIIRLNNNCYMAFKRRSDRVDHMTWNGTCWLSSSFLMVLSCGLRTSGNPVSVG*

>peptide 4 (59 aa)
PVKASELATPAAGRPSKETGSLCRMSSGGIDRGLCAPPSVLPTGAAAASLDFGCAPAGR*

>peptide 5 (57 aa)
SQSERASYSSCWPAVERDRITLPDEQRWDRSWIVRASVRPADRRGGRELRFWLCSCW*

Sequence

>CNT30117531
CCAGTCAAAGCGAGCGAGCTAGCTACTCCAGCTGCTGGCCGGCCGTCGAAAGAGACCGGATCACTTTGCCGGATGAGCAGCGGTGGGATCGATCGTGGAT
TGTGCGCGCCTCCGTCCGTCCTGCCGACCGGCGCGGCGGCCGCGAGCTTAGATTTTGGCTGTGCTCCTGCTGGTAGATGAATATTTATCTTGGATTTCAT
CGAATTCTTCATTGATTTATTCGTTCTTCGATTTCGGGTATCTCAGGCAAGTCCAACACCTTTGATCAACTCTTGTTATATTTTCATAATTGCAATCTAT
ATGTATCACCTTGCATTAAATTATATTTTCTATAATTGAAATAAATATGCTGATGGATTGGATTGACTGGTGGAGCAGTCGGTCATATTATAGATGTATT
CTGAACCTGCTATGGTGGTGGGGGTTCGGTTGCACATATTTATCATCATAAGGTTAAATAATAACTGTTATATGGCATTCAAGCGTCGTAGCGATCGTGT
CGACCATATGACCTGGAATGGGACATGCTGGCTTAGTAGTTCTTTCTTAATGGTTTTATCCTGCGGCTTAAGGACTTCCGGGAATCCTGTGAGCGTGGGC
TAGCGATGAGGGTTGCCGTTGTTGCGGAATCCGATTAGATGATGTGGATCGCCGTTGTTCCGGGATCCGATGATTCGCCGTTGTTGCGGGAATCACCCGC
AGAGATTATTGCCAGATGGGATTGATGAAAAGCTTGTGACCTTAGCCTTGCCGGCATACACCATGAAGTGTGCTTCAAGCGCCGACGGGCGTGGGCATTA
AAAGGTTTAAGGCGTCTGTGGGTACAGCGACACACCTCTGCAGAGTGTATGAATTGTGATATGTCACTCCCTGTTTCGGGTAGAAACTGCGAACACGGCA
GGAAAGGAACCTATCGGAGGTTCTAATACCTGTGGTGCCTTATATACAGTAGATTTTATAATTACTTAATATGAGTTTTTACAACACTGTTTTATGAACA
TGCATAAAATTCCTTGTTGGATTATGGTGGCTTTGGACATATATGTATTATACAGGT