Detailed information on CNT30117499


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671156Oryza nivaraSetaria viridis57.5423.7181.55206forward
CNT30552889Oryza nivaraOryza glaberrima43.5814.594.87156forward
CNT30443963Oryza nivaraAegilops tauschii60.3410.1288.43216reverse complement
CNT30595638Oryza nivaraOryza meridionalis43.8510.8497.45157forward
CNT30370294Oryza nivaraOryza glumipatula100.2842.4997.21359forward
CNT30109053Oryza nivaraOryza longistaminata57.2612.6279.51205forward
CNT30101709Oryza nivaraOryza rufipogon58.3816.5297.61209forward
CNT30578242Oryza nivaraOryza barthii42.7416.2898.69153forward
CNT30551939Oryza nivaraOryza brachyantha45.5314.6792.02163forward

Expression of CNT30117499

Peptides detected in this lncRNA

>peptide 1 (31 aa)
IKEMLTAAVLLTAAVLATEKYAKGVDAVLKR*

Sequence

>CNT30117499
GCATAAAGGAGATGCTAACTGCTGCTGTCCTACTAACCGCAGCTGTCCTAGCAACTGAAAAATATGCTAAAGGGGTAGATGCTGTCCTGAAAAGGTGAAA
CTACCCAAAAGCAAAAAGAAGAATCACGACCAAGGACCATAAAGACTTATCCATCATTCTCCCCCTAAGTCTTGTGCGTCGTCTTGTGGGGAAGTTGGGC
CATCCCGATCCTGGAGCAGAGCTCGAGGAACTTGATCCTCCCAAGAGGCTTGGTGAGCAAGTCCGCAAGCTGGTCCTTGGTGTTGATGTAGCTCGCCTTG
ATGCTCCCTTCCTCCAAGTAGCTTCGGATGAAGTGGTACCTCACCCGGATGTGCTTGC