CANTATAdb - search

Detailed information on CNT30117497

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001126, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695966	Oryza nivara	Oryza sativa	87.42	100.67	94.68	903	forward
CNT30597242	Oryza nivara	Oryza meridionalis	47.92	101.43	93.13	495	forward
CNT30370210	Oryza nivara	Oryza glumipatula	74.54	47.44	92.47	770	forward
CNT30109911	Oryza nivara	Oryza longistaminata	33.2	55.59	94.75	343	forward
CNT30102949	Oryza nivara	Oryza rufipogon	56.53	58.46	98.8	584	forward
CNT30575755	Oryza nivara	Oryza barthii	25.75	103.91	92.11	266	forward

Expression of CNT30117497

Peptides detected in this lncRNA

>peptide 1 (91 aa)
PSPPATVLNPIGRPTFSPSRPCLVSRKNRGTPPRIRRERRRHLRRRREKSSTPSQSANLREHDRVNSEHRRALDAAASPLLVARLPQFVTS*

>peptide 2 (39 aa)
MTTVAAAPSPKQYTVAKTSPSRICCLTFAAESRGGLLCS*

>peptide 3 (89 aa)
LHLRRRPYLTRSADQLSLPLALVSFRGRTEVPHLGFAGNGGAISDAGERSPRLRRNPPIFGNTTASTRNTVALWTPLLRLCSSPGFHSS*

Sequence

>CNT30117497
CTCCATCTCCGCCGGCGACCGTACTTAACCCGATCGGCCGACCAACTTTCTCTCCCTCTCGCCCTTGTCTCGTTTCGCGGAAGAACCGAGGTACCCCACC
TCGGATTCGCCGGGAACGGAGGCGCCATCTCCGACGCCGGCGAGAGAAGTCCTCGACTCCGTCGCAATCCGCCAATCTTCGGGAACACGACCGCGTCAAC
TCGGAACACCGTCGCGCTCTGGACGCCGCTGCTTCGCCTTTGCTCGTCGCCCGGCTTCCACAGTTCGTGACAAGCTGAGCCACTTCGCCACGAGTTTCAT
CAACCCCTGTAGATCAAGAATCCCGAAGGAATCGACGCAAGGTGGACCACGGTGGGAGATCCTCTTCTTCTTCCCCAACTCCGGCCGCCGACGCCATTCC
TTTCTTTCTCCTTCTCTGTAGAAGCCTGGGGGTACACCGTCGATGACGACCGTAGCAGCCGCGCCGTCGCCGAAGCAGTACACCGTCGCCAAGACTTCGC
CGAGCCGCATTTGCTGCTTGACATTTGCAGCCGAGTCTCGAGGAGGCCTACTTTGTAGCTGAGCAAGGAGTGGAAGAGCAAGGCAAGCCACCTCCCCTCT
TTGATCACATTGAACCTATGATTTGGAGGTTTTTTTTTTTTGAAAGTTTGCAACATATGCATGTCCATTGTCCACTAATCCATTAAAATCTTGTAAAATT
TGTTAGATCAACTCCTTAACTTGCATTATCACCTGAACTCCACAAAAGACCTTAACCATTATTCCAAACCTTAGGAACAATCCATTGTGTCATATTAAGA
ATGATGTTTGAGGTCACAAGTCTATAAAAATGCTTAGCCATGCTTAGTGATGAGTTTACTTACCATTTGGGCTCAATTACATATATTAAATGATTTATTT
TATGATCTGGATTAAAATGATAAAATGTGATATTTGTTAAATAAAATGTTGGAAAATGTGGATTTTAGGTTTGGGCCGCATGTGGTACACATATTGTGTT
TAGTTGTGTACTGATAGGGGGAGAGTGTGCCCA