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Detailed information on CNT30117488


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0J8M2|FER1_ORYSJ, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675966Oryza nivaraSetaria viridis22.740.0891.15192forward
CNT30523554Oryza nivaraSetaria italica24.2351.5190.24205forward
CNT30443073Oryza nivaraAegilops tauschii22.728.0391.67192forward
CNT30248458Oryza nivaraAvena sativa23.6435.4688.5200forward
CNT30683395Oryza nivaraTriticum urartu22.730.3891.67192forward
CNT30343861Oryza nivaraEragrostis tef22.733.6889.58192forward
CNT30366812Oryza nivaraSorghum bicolor23.5252.6592.46199forward
CNT30577438Oryza nivaraOryza barthii74.3510099.68629forward
CNT30579416Oryza nivaraEchinochloa crusgalli22.3422.3990.48189forward
CNT30497787Oryza nivaraDigitaria exilis22.5827.888.48191forward

Expression of CNT30117488

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MYTSSGTCSSTSPSGVISFTLYVACIRSLSPSLLLAGSTDTRAGTSATGPGCSVPSPPWLL*

>peptide 2 (84 aa)
AILMGLILTSIGIYTSIHTRTVNSVRNTWSRHKSRTRIYSLLINCSFKYMEYVFDSSIYDTVMHAYMTPKCDMDMIKQVQQNVH*

Sequence

>CNT30117488
GCGATTTTAATGGGATTAATTTTGACCTCGATCGGCATATATACATCCATTCATACACGAACAGTTAATTCAGTACGAAACACATGGAGTAGACACAAGA
GTAGAACTAGGATATATAGCTTATTAATTAACTGTTCTTTCAAATACATGGAGTACGTATTTGACAGTAGTATATATGACACAGTAATGCATGCATATAT
GACACCAAAATGTGATATGGATATGATTAAGCAGGTGCAGCAAAACGTACATTAATTAAACAACAACAATTAACCCTCGGGCACGCCTGTGTTTTGTTAT
CTCGCTCAACGTATACGTACGTAATACTTTGCTTGCATAGCATAGGGACGACGACATTATATTCTTAATTGATAAACTCAAGAACGCATGGAGATGGATT
GAGAGATTTATAAATATGGAGCTTGCTTGATTGATTAGATGAGGTCGTCCTCCTTGTGGGTCTCGATGACGACGTCGGACTTGGGGTAGGCGTGGCAGGA
GGAGCAGGAGCCCGCGCGGCAGGAGTAAGGCAGGTCGATCCCTTCCTCCTCCGCCTGGTCCAGGATGTACACGTCGTCCGGCACCTGCAGCTCCACCTCG
CCGTCCGGTGTGATCAGCTTCACGTTGTACGTCGCCTGCATCCGCAGCCTGTCTCCCAGCTTGTTGCTCGCCGGCAGCACCGACACGCGCGCCGGGACAT
CGGCAACCGGACCTGGCTGCTCAGTGCCGTCGCCGCCATGGCTGCTATAGCTAATTAAGCTAGCTAGCTGCTGCTGCTAGGTAAGGTAGACGAGGAGGAG
AGGAGTGAGCTAGCAAGAATGTGAGCGTGAGGTTGAAGGAGGCTGA