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Detailed information on CNT30117466


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546122Oryza nivaraIpomoea triloba17.1954.5582.81192forward
CNT30555589Oryza nivaraOryza glaberrima83.3553.3598.93931forward
CNT30146667Oryza nivaraMedicago truncatula7.1628.3783.7580forward
CNT30440942Oryza nivaraAegilops tauschii7.4338.2597.5983forward
CNT30338628Oryza nivaraEragrostis tef8.6827.3296.9197forward
CNT30367313Oryza nivaraSorghum bicolor22.1143.4989.47247forward
CNT30150825Oryza nivaraBrachypodium distachyon15.5829.3990.23174forward
CNT30104724Oryza nivaraOryza rufipogon63.0367.4399.15704forward
CNT30578591Oryza nivaraOryza barthii94.1866.62981052forward

Expression of CNT30117466

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MHRQTISSTYATTILMVEQMESIHGQQYQVVHIQLYYNDRKNSRIIEQN*

>peptide 2 (48 aa)
LQKNCRNKNTSQGQGHLSNRSKHADQTRRICKGLSSMLAYIHHLIAKS*

>peptide 3 (38 aa)
HYKKIAGIKILHKAKDISPTEASMRIKQGAYVKDYLLC*

Sequence

>CNT30117466
CATTACAAAAAAATTGCAGGAATAAAAATACTTCACAAGGCCAAGGACATCTCTCCAACAGAAGCAAGCATGCGGATCAAACAAGGCGCATATGTAAAGG
ATTATCTTCTATGTTAGCATACATACATCACTTGATAGCAAAATCATAAGCATAAACATAATTCACCACTTGAAAGAGCGAATTGGCCAATCATATTAAT
CATGCATAGACAAACAATATCTAGTACATATGCCACCACAATCTTGATGGTAGAACAAATGGAAAGCATCCATGGGCAACAATATCAAGTAGTACATATA
CAACTATATTATAACGATAGAAAAAACAGCAGGATTATTGAACAAAACTAGTTGTTTGTGGTGCTCTATTACACAGTATCAACAGAAGCAAATGTTCGAA
AATACACTAAAGTAGCTACATCCAAGGCATTCGAATCATCTCTAAACAAATGGCACATATATTTACTTTGGGTCTCTACTAAATAACAAATAATTAAAGC
AACATTAAATCGCATCATCCATATTTAGATTGAGCCGAGATCATTTCCAATAGATGAGTTCTTCTAATCACGCGAACAAATCAATTCAGATCCAATAATA
GTAGTTACTACCACACAACTACGAGACTAACAAACAGATCTAACACAAAACATCTCATCAATTCAGGCAAAAAAAAGAAGCGAGAGAGATGGGGATCACC
TGGATGTGCCGTTGTCGGGGTTGTGGCTGATGACGATGGCGTAGTCGCCGGACGCCCTGGCGAAGACGCCGCGGTCGCCGACGTGGTGCTCGACGTTGCA
GACCACGGCGCCCTCGGGTACCGACCGGATCGGGAGCACGTTGCCGATGGAGAGCGTGGCGCGGCGGCCGCAGTAGACGAACTGCCCCGTGTACATCCCC
TCCGCCGCGACGAACAGCTCCTTCTGGTGCTTGTACCGGAACGGGTGGCGGAACGTCACCTTGGGAGCGGAACCTCGCGGGGCCCTTGCGGTGGTGGGTG
TGGGACTTGAACACGGAGCCCGCACCCTTACGCTGCGCGCGGATCACGCGACCCATCTCCTCGTCGGCGGCGAGTCGGCGGCGGCGGCGGCGGCGGCGGG
GAGAATGGGGGAGGCGG