Detailed information on CNT30117453


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 1e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30564637Oryza nivaraActinidia chinensis20.4314.1487.58161forward

Expression of CNT30117453

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MHAGNNYHNTHSKSESYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 2 (48 aa)
MHPDPCMQETITTTHTVSLNLIHAYSTKKKRRNKKRTSSIAQSSVSPA*

>peptide 3 (51 aa)
MMVLSKGPFCVTLCCTRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFF*

>peptide 4 (35 aa)
MASFHCMLLFFSSDILIESYRWRAPSPWPRGWARS*

>peptide 5 (37 aa)
MHTPQKKKEETRREHLPSPNHRFHQPELIKLLEMPWP*

Sequence

>CNT30117453
TCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAG
AACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGC
ATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTTATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCA
TCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGA
TGATGGTGTTGTCGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAAC
AAAAATTCAGAACAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCTTCTGATATATTGATAGAATCGTACCGTTGGCGAGCTCCTTCTCCTTGGCC
TCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGCGGCGGGAGGCTGTAGCTCTTGAAGATGGGGTCCTGGTTGA
CGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGACGA