CANTATAdb - search

Detailed information on CNT30117448

BLAST search results

BLAST vs Swiss-Prot:
sp|P84563|PSAD_POPEU, E-value = 8e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695326	Oryza nivara	Oryza sativa	63.85	64.52	99.77	431	forward
CNT30525887	Oryza nivara	Phaseolus vulgaris	13.78	24.87	86.02	93	forward
CNT30664930	Oryza nivara	Triticum dicoccoides	33.19	69.78	88.84	224	forward
CNT30358483	Oryza nivara	Lactuca sativa	21.33	22.02	83.33	144	forward
CNT3035037	Oryza nivara	Cucumis melo	14.07	31.67	86.32	95	forward
CNT30558912	Oryza nivara	Panicum hallii	9.93	26.07	95.52	67	forward

Expression of CNT30117448

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAMVVGGGERRVPCGRFDSSGVVWRREISEME*

>peptide 2 (50 aa)
MSKTFLPVNLTSMGLTFLPMLRKLGPSRMMAAPPVGISNTCSLGDVHVMT*

Sequence

>CNT30117448
GAAGAGATTATATCCCACCATCGATCGATTACACCATCATCAATAACTGAAGAGCAGCCTGACAGATGATTAAAATTACATGTCCATCCACCCAAAACAC
AAGTAATTAATAGGTCGATTATGAGAGAAGAAGAAGAAGAAGAAGTCTAGATGTCGAAGACGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTT
CTTGCCGATGCTGCGGAAGTTGGGGCCCTCGCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACACCTGCTCCTTGGGCGACGTCCATGTGATGACG
TAGAACTCCTCCACCTGCGCCTTCCGGAGGAGTCCCCCCGTGCTCCCGCCGAAGATCGGGGACGGCGTGTTGGGGTCCAGCTGCGGCGGCACGAACCCCG
CGGGGGCTGGCTTCTTCTCCTCCGTCGCCGCCGCGGCGGGCTGATCCTCCGCCGCCGCTCTGAGGGAGGTGGGTGCCCTCGAGGAGGTGGCACTTGGCGG
CGGAGGCTTGCGTGGCCATGGCCATGGTGGTCGGAGGAGGAGAGAGGAGGGTACCGTGTGGTAGATTCGATTCGAGTGGTGTGGTGTGGAGGAGAGAGAT
ATCGGAGATGGAGTAAGAAGAAGAGAGGGGAAATGGGTGAGGAAGTGGATAAGGGGATATGAGGTTGGCCAATGG