Detailed information on CNT30117442


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672556Oryza nivaraSetaria viridis53.8166.3692.24219forward
CNT30393881Oryza nivaraTriticum turgidum48.448.8890.36197forward
CNT30587002Oryza nivaraMusa acuminata21.1331.8593.0286forward
CNT30511330Oryza nivaraSolanum lycopersicum26.2926.2386.92107forward
CNT30440426Oryza nivaraAegilops tauschii31.227.0892.13127forward
CNT30721746Oryza nivaraTriticum spelta31.27.993.7127forward
CNT30596728Oryza nivaraOryza meridionalis100.4984.3399.02409forward
CNT30371441Oryza nivaraOryza glumipatula10099.7599.75407forward
CNT3024196Oryza nivaraPopulus trichocarpa24.5722.0385100forward
CNT30322486Oryza nivaraAsparagus officinalis26.7823.2486.24109forward
CNT30151232Oryza nivaraBrachypodium distachyon54.7918.492.83223forward
CNT30104395Oryza nivaraOryza rufipogon74.9461.7499.67305forward

Expression of CNT30117442

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRPTFWPGGASRRTVEAFPALSIGFSVLPPPAT*

>peptide 2 (30 aa)
MTTKTANIHHKCDQSTKQKARPYWNTCPLI*

Sequence

>CNT30117442
AACCAGGTAAAAACTTCTTTAGGTGGAATGTAGAATCCAGACCATGACCACGAAAACTGCGAACATTCATCACAAATGTGACCAGAGTACCAAGCAAAAA
GCACGACCATACTGGAATACATGTCCTTTAATCTAGCGATGATAAGCATGGTAGCGAATATGGATAGTAGCAACAATAAGTAACACTCTAAGTGGCCTTG
TCGGCCTTGGCAGCGGTAGCGGCGGCCTGGCCTCTGAGACGACCAGTCCTCCTTGCAGCGATGAGACCAACCTTCTGGCCAGGAGGTGCATCACGGCGGA
CGGTGGAGGCGTTTCCAGCCTTGAGCATCGGCTTCTCAGTCCTGCCACCACCAGCAACCTGACCGATCATGGCACGGCAGCTGCTGGGGACAATCTTCTT
GGCACCA