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Detailed information on CNT30117441


BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 5e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596794Oryza nivaraOryza meridionalis35.0444.4999.66295forward
CNT30370923Oryza nivaraOryza glumipatula78.0377.9499.54657forward
CNT30577354Oryza nivaraOryza barthii88.849197.19748forward

Expression of CNT30117441

Peptides detected in this lncRNA

>peptide 1 (31 aa)
VNEHASKFTKHILQYYKKRLYPTIDRLHHHQ*

>peptide 2 (37 aa)
MSKTFLPVNLTSMGLTFLPMLRKFWPTPCLPALTFSG*

>peptide 3 (33 aa)
TLMNTHQNSPNIYYNIIRRDYIPPSIDYTIINN*

>peptide 4 (32 aa)
MAMVVGGGERRVPCGRFDSSGVVWRREISEME*

Sequence

>CNT30117441
ACGTTAATGAACACGCATCAAAATTCACCAAACATATACTACAATATTATAAGAAGAGATTATATCCCACCATCGATCGATTACACCATCATCAATAACT
GAAGAGCAGCCTGACAGATGATTAAAATTACATGTCCATCCACCCAAAACACAAGTAATTAATAGGTCGATTATGAGAGAAGAAGAAGAAGAAGAAGTCT
AGATGTCGAAGACGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCGACGCCCTGCCTGCCGGCGTT
GACCTTCTCCGGGTAGACGCCGTCCTTGGGGTGGAGGTACTGCACCTCGCCATTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGG
AGCCTGGTGCCCAGGGCCAGGCACTGCTCCTTCCTGGCCAGCTTCAGCAGGTTGGGGCCCTCGCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACA
CCTGCTCCTTGGGCGACGTCCATGTGATGACGTAGAACTCCTCCACCTGCGCCTTCCGGAGGAGTCCCCCCGTGCTCCCGCCGAAGATCGGGGACGGCGT
GTTGGGGTCCAGCTGCGGCGGCACGAACCCCGCGGGGGCTGGCTTCTTCTCCTCCGTCGCCGCCGCGGCGGGCTGATCCTCCGCCGCCGCTCTGAGGGAG
GCTTGCGTGGCCATGGCCATGGTGGTCGGAGGAGGAGAGAGGAGGGTACCGTGTGGTAGATTCGATTCGAGTGGTGTGGTGTGGAGGAGAGAGATATCGG
AGATGGAGTAAGAAGAAGAGAGGGGAAATGGGTGAGGAAGTG