Detailed information on CNT30117427


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0D5R2|CRK10_ORYSJ, E-value = 9e-07

BLAST vs NONCODE:
NONORUT005244, E-value = 6e-92

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695372Oryza nivaraOryza sativa50.9148.7398.39808forward
CNT30553004Oryza nivaraOryza glaberrima19.0357.3194.7302forward
CNT30370494Oryza nivaraOryza glumipatula19.0332.393.38302forward
CNT30102293Oryza nivaraOryza rufipogon17.6452.0494.64280forward
CNT30575869Oryza nivaraOryza barthii19.0339.0793.71302forward

Expression of CNT30117427

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MCCCWNVVIILSSPIALVRLSFPLLRKVRECVRSGSKD*

>peptide 2 (93 aa)
YCSSSTPGCRTETELARFFSSESGLISRAFLKLVEGKYSSYPPLSLPLKIRLYPFEFDANLDSFSSLSLHQTLGFPGAIPCVPSPISLSRGYK*

>peptide 3 (32 aa)
MSRDYPIIFRFIVKAKTTHQTIYTSETCNFYQ*

>peptide 4 (30 aa)
TVHLQPLAAELRPSWLGFSPPNPALSLVHS*

>peptide 5 (31 aa)
MQFLSMTLPLKVSSILDLFAMIMANSTKEEI*

Sequence

>CNT30117427
GTACTGTTCATCTTCAACCCCTGGCTGCCGAACTGAGACCGAGTTGGCTCGGTTTTTCTCCTCCGAATCCGGCCTTATCTCTCGTGCATTCCTAAAATTA
GTTGAGGGGAAATATTCCTCTTATCCTCCTCTATCTCTTCCACTAAAAATCCGACTTTATCCCTTTGAATTCGACGCGAATTTGGATTCGTTTTCGAGTT
TATCTCTCCACCAAACCCTAGGTTTTCCCGGCGCGATTCCTTGCGTTCCAAGCCCGATCTCTCTCTCCCGTGGCTATAAATAGTGTCCCCTCCCTCTCCT
CTTTCGGCCGCCACCTCTCCCTCTCTCCGCCGTCGCTTGTAGCGCCGTCGCCGCGTTCGTCTTCTCTCTCCGCCGCCGGCAACCGCTCCAGCCGCTGTTT
GCCGCCGCCTCAGCCGACGCCCTCCTGTGCCACCACATCTCTCGGCTCCGCAAGGTCAAGAGCAAGCCCAGCAGCTGGTTCCCTTGCGCCGAAGACCCCG
GGAAGCCCGTCGTCGCCATCAACCCGAAGTTCATCGTCGTGTTTTGATCTCCGGTGAGGCTCTGCTGCTCCTCTCGTCATCGCCAAGCTTCGCCGCCACC
TCCATTGGATTCGCAGCTGCGAAGTGAAGCTCGGCCACCCTTCCATTGTCGCTGAAGGTCGCCGAAACGCCGTCGCCACCGTGGACAGTACCTCGTTGCC
TTTTGGAGCTTGTCGCCGGCCATCTCCTGTCGCTGTTTCTCGTTGCCGCCACCACTGGTGAGTTCGCTGTGTCCTCCTATTCCGTCGCTGTCCGTCATCA
CGTAAGTGTTGGTAAGAATCGCCGTCGCCTCCTCTACCTCCCGGTGTCCTCCGTTTGCATTATTGTGTCGTGGTTCGCCGGCAACCGCCGCTCCTATGTC
GTTCACCGGTGTAGTTTATCCCTAGGGTCTTAATCCAATATAATCTAATCCGTGGTTGGTCTAGCGTTGTCATCTCCATGTGTTGCTGCTGGAACGTTGT
CATCATCCTTTCGTCTCCGATCGCTTTGGTTCGCTTGTCGTTTCCGTTGTTGCGAAAGGTTCGCGAGTGCGTCAGAAGTGGTTCTAAAGACTAATTGAAG
ACCGATTATTGCAAGAGCTCAAGCGATTTAGTCAAGTCTCCTGGGATGTGTAACACATCTGGTCGTCGCCTTCGTGTGGTTTGACGGGCACGTCTCAGGC
TGAAGTTGACTGATTTGTGTAGCAACCACCTGAAATGATGGCGATTGCACTGGTTATGCTAGGATTTCTACTATTATCTGGATATGTCACGGGATTATCC
AATTATCTTTAGATTCATTGTGAAGGCAAAAACTACACACCAGACAATATATACAAGCGAAACATGCAATTTTTATCAATGACACTGCCACTTAAGGTCT
CATCTATCCTAGATTTGTTTGCAATGATCATGGCCAATAGCACAAAAGAGGAGATATAAGCAGTTGGATGGTGTCGTGCTGATATTAGTAGTACTACAGA
CAATAGTTGTGTTATGTATGCAATACGGAACGTGCAAATAGTTTGAGCTTCAAAGATGGAAGCTACCATCTTTTACAACTTGTGTGG