Detailed information on CNT30117389


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A4D6Q411|MYB1_CROXC, E-value = 4e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695504Oryza nivaraOryza sativa57.2665.3999.16359forward
CNT30518802Oryza nivaraJuglans regia18.0229.3585.84113forward
CNT30220903Oryza nivaraHordeum vulgare12.2837.7592.2177forward
CNT30131453Oryza nivaraLolium perenne31.4252.5393.91197forward
CNT30596691Oryza nivaraOryza meridionalis37.1620.3398.71233forward
CNT30577574Oryza nivaraOryza barthii37.6424.2198.73236forward
CNT30604508Oryza nivaraOryza punctata57.4241.3894.44360forward

Expression of CNT30117389

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MGRLLKSSMPALRPRKLLPAPAPPPPPLHLHSFWRPRLQPKQRPPRRRCSSVALTIIAGFAS*

Sequence

>CNT30117389
CACTCACTTTGCTCAGTCTCTCATCTCATGACCTGTCTTTGTAGCGGTTGATTTCCTCCTCGCGCTTTTATCAGTACACTAGTTGTTATTGGCGCCAACC
CGTTTGGGACGGACACATTCATCGGGTCCTGAAGAAAAAGGATCATTTCATTTCATGGGGAGGCTTCTGAAGTCGAGCATGCCAGCCCTGAGGCCGAGGA
AGTTGTTGCCGGCGCCGGCGCCGCCGCCGCCGCCGCTGCACTTGCACTCCTTCTGGAGGCCGAGGCTGCAGCCGAAGCAGAGGCCGCCGCGGCGGCGCTG
CAGCTCCGTCGCCCTCACGATCATCGCCGGCTTCGCCTCATAGTCATCGTCTTCTTCCTGGCACGACGGCGGGCTGATGCAGAGGTCCAGGTTGAGGTCG
GGGCGGAGGTAGTTGATCCAGCGGAGGCGGCAGCTCTTGCCGCAGCGGAGGAGGCCGGCGGCCTTGGGGAGCGAGCGCCAGCAGCCCTCGCCGTGGGCGC
GGATGTAGGCGACGAGGCGCTCGTCCTCCTCCTTGGTCCACGCGCCCTTGTTGGTGTGCTCCTTCTCGCAGCACGGTGACCTCCCCATCGCTGTTGGTCT
CGGCCGGCGGCGAGTCGTCGTCGTCGT