Detailed information on CNT30117344


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691013Oryza nivaraOryza sativa39.5923.4487.01154reverse complement
CNT30596061Oryza nivaraOryza meridionalis56.565.6284.09220reverse complement
CNT30100142Oryza nivaraOryza rufipogon39.8529.0387.1155reverse complement

Expression of CNT30117344

Peptides detected in this lncRNA

>peptide 1 (44 aa)
QGAVLQRRKGRPQQQAVASRRRRRPEAEARGRTERVWETRGTRV*

>peptide 2 (92 aa)
RAPSCNDARVGRSSRRWPRGGGGGRRRKRGEGQRGFGRQGERGFKSIPSRSSIRYSIRNIAHMGGEIVAPADTASRHPKIEDPPNRREFGQI*

Sequence

>CNT30117344
GCAGGGCGCCGTCTTGCAACGACGCAAGGGTAGGCCGCAGCAGCAGGCGGTGGCCTCGCGGCGGCGGCGGCGGCCGGAGGCGGAAGCGAGGGGAAGGACA
GAGAGGGTTTGGGAGACAAGGGGAACGAGGGTTTAAGAGCATCCCCAGCAGATCCTCTATCCGGTACTCCATCCGAAATATAGCGCATATGGGAGGAGAA
ATCGTCGCTCCAGCAGATACGGCATCGAGGCATCCAAAAATAGAAGATCCGCCAAATCGGAGAGAGTTCGGCCAAATATAGGGATTCTCGCTCTCTCTCC
TCACGCCATACCTCGACGTCCGCGCTCCCGCCCCCATCGGGATTTCCGGATCAACGTACCCTCCGTCGTCGTCGTCGCTCGCCCGCCGC