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Detailed information on CNT30117331


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SU13|FLA2_ARATH, E-value = 4e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695832Oryza nivaraOryza sativa21.0338.0783.61244forward
CNT30523645Oryza nivaraSetaria italica8.3635.9391.7597forward
CNT30368186Oryza nivaraSorghum bicolor7.1621.6784.3483forward
CNT30370943Oryza nivaraOryza glumipatula29.7432.61100345forward
CNT30108228Oryza nivaraOryza longistaminata30.2636.4599.15351forward
CNT30102939Oryza nivaraOryza rufipogon31.938.62100370forward

Expression of CNT30117331

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MAAFPLAVRFLYLGRKASTAASTGQKSVSPLSLVALMLLYTSAFEARRPAKFLQYFLDRSSVRFTGAGGATGASASGEDSGLLIWSTASWWSFLAP*

>peptide 2 (56 aa)
MKNSRITPLIKFLLFCFNFFPGNCSDKYIDIKINSPSYFLHQRGTRIGQKKKRERS*

Sequence

>CNT30117331
GAAAAGCAAAAAAAGGATATGGGGTACAACTCTAAACTTGATGATGTCTTTAATCATATATAAACACACTGTCCAATCTCATTGACCACTATCATTACAA
AATGATCACCACAAACCCAATAAACAAAAGAAAATGAAAAACTCTAGAATCACACCTCTAATTAAGTTTCTTCTTTTTTGTTTCAATTTTTTCCCTGGGA
ACTGCAGCGATAAATATATAGATATAAAAATAAATAGCCCTTCTTATTTTTTGCACCAACGAGGGACACGAATTGGACAAAAGAAGAAGAGGGAGAGGAG
CTGAAGAACTCAACACAAAATGCACTAAGCTCAAACCACCACCTCAAGCTGCCAACGCCAACGCCGCGGCGACCGTGGCGGCGGCGGTAACCCACCTGGC
GAGCACGGACGGCGCGGCGGCGGCCTTGTCCGCGACGTCGTCCGCGGGGGTGCCGTCGGGCGAGTCGGCGGCGGAGGAGTCGTCGGAGGGGGCGGCAGCG
GCGGAGATGGCGTAGACGGCGAGCGGGTCGGCGTCCTTGACGGTGGCGGTGACGGAGGCCGAGTTGACCTTGGTGTCGAGCAGGACGCTGTCGCGGTCGT
TGGAGACGTCGTAGCTGTAGTCCTTCTTGGCGACGCTGGCGGTGGCGAGCGTGCTGACCTTGCCGCTGTTGGACTTGAGCAGCTGGAGCGAGTAGTAGTC
CGGCACGGCGTGGTAGAGGAGGATGGCCGCCTTCCCCTTGGCCGTCAGGTTCTTGTACTTGGGCAGGAAGGCGTCGACGGCGGCGTCCACGGGGCAGAAG
AGCGTGAGCCCGTTGTCCTTGGTCGCGTTGATGTTGCTGTACACGTCGGCGTTCGAGGCGAGGAGGCCGGCGAAGTTCTTGCAGTACTTCTTGGACAGGA
GCTCGGTGAGGTTCACCGGCGCCGGCGGGGCCACGGGCGCCTCCGCCTCAGGGGAGGACAGCGGCTTGCTGATCTGGAGCACGGCGAGCTGGTGGAGCTT
CTTGGCGCCGTAGTAGTCGACGAGGATGTGCATCTCGAGGATGTGGCGGAGCGTGGGGAGGGTGTAGTGGCCGCCGGAGAGCGCGCCCATGTCGCCGTTG
GCCACCACCAGCACCGTGATGGTGCGGCGGCGGTTGATGTCGCCGGCCAGCCGCGTCTCT