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Detailed information on CNT30117328


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZA6|GL85_ORYSJ, E-value = 4e-109

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297939Oryza nivaraTriticum aestivum61.9974.3582.23287forward
CNT30223789Oryza nivaraHordeum vulgare7343.5681.07338forward
CNT30401458Oryza nivaraTriticum turgidum62.4272.9880.97289forward
CNT30586666Oryza nivaraMusa acuminata36.9322.2980.12171forward
CNT30240671Oryza nivaraAvena sativa78.446.4882.09363forward
CNT30664982Oryza nivaraTriticum dicoccoides79.4843.7682.88368forward
CNT30468383Oryza nivaraSaccharum spontaneum95.0370.8580.91440forward
CNT30140763Oryza nivaraLolium perenne58.196.0781.78269forward
CNT30688823Oryza nivaraTriticum urartu79.4835.8382.34368forward
CNT30102982Oryza nivaraOryza rufipogon32.1849.6783.89149forward

Expression of CNT30117328

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MRAIEMPSVLSPGICMTLISVTFDPTLFVFLGVSSLAALKKWSAFTSIGFKQ

>peptide 2 (30 aa)
MSPSGKTNTSPLLRTLENNVLFGLDVTKPT*

>peptide 3 (33 aa)
TLSEIGGFDPNTAFAMVMAPGFWLLSAAIATAG*

Sequence

>CNT30117328
AAACTTTGTCTGAAATCGGTGGCTTTGATCCGAACACTGCATTTGCAATGGTGATGGCACCGGGGTTTTGGCTGCTTAGTGCAGCAATTGCAACCGCGGG
CTGATGGGGGTTAGGGTTGAATTGGAAGTGGATGAGCCCCTCAGGGAAAACAAACACATCACCCTTGTTGAGAACCTTGGAGAATAATGTGTTGTTTGGA
TTAGATGTGACAAAGCCGACATAGAGGGTTCCCTCAAGGACTGTGAGGATCTCAGTTGCACGGGGGTGTGTGTGCGGTGGGTTCTCACCCAAGGGTGCGT
AGTCGATGCGTGCAATTGAGATGCCGAGTGTATTAAGTCCAGGGATCTGCATGACGTTGATCAGTGTGACATTTGATCCAACCTTGTTTGTTTTTCTAGG
AGTGTCAAGCTTGGCTGCCTTGAAAAAATGGTCTGCATTCACTTCCATTGGGTTCAAGCAAGC