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Detailed information on CNT30117307


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000877, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692322Oryza nivaraOryza sativa65.2793.7594.27855forward
CNT30555143Oryza nivaraOryza glaberrima22.2980.4494.52292forward
CNT30596034Oryza nivaraOryza meridionalis30.6170.4791.27401forward
CNT30108101Oryza nivaraOryza longistaminata31.0786.2396.07407forward
CNT30100112Oryza nivaraOryza rufipogon30.8487.0792.57404forward

Expression of CNT30117307

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MKGLFPARPFSVPHPQPTNQEDTEGEIERADVWPQRVDDLGLSFSRSLLLQSESPFLTHHSKPKKPRGAGPLPLCHQRPHHRLWR*

>peptide 2 (54 aa)
ADWLDGDEVAAADWLAAARWRRRIGWAAAVWLGGGGAWFQRWRRRLIGRRREAE*

>peptide 3 (46 aa)
RIGWTVTRWRQRIGWRRRGGGGGLAGQRRFGWVAAAPGFSGGGGGS*

Sequence

>CNT30117307
GCGGATTGGTTGGACGGTGACGAGGTGGCGGCAGCGGATTGGCTGGCGGCGGCGAGGTGGCGGCGGCGGATTGGCTGGGCAGCGGCGGTTTGGCTGGGTG
GCGGCGGCGCCTGGTTTCAGCGGTGGCGGCGGCGGCTCATAGGAAGGAGGAGGGAGGCCGAATAGACTTTTGCCAATTGGGCCGAATGAAGGGACTTTTT
CCAGCTCGCCCTTTCTCTGTGCCTCACCCTCAGCCGACCAACCAAGAAGACACAGAGGGAGAGATCGAGCGAGCCGACGTGTGGCCACAACGTGTCGACG
ACCTCGGGCTTTCCTTTTCTCGCTCTCTTCTCCTCCAGTCTGAGTCGCCATTCCTCACTCATCACTCAAAGCCGAAGAAGCCGAGGGGAGCAGGTCCTCT
GCCTCTCTGTCACCAGCGACCTCACCACCGGCTATGGAGGTGACGACCATCGCCATCTCCGTTTGAGTCAAGCCACCGGAACATGACCACGCCAACAACG
CCCTAGAGCACGCACCGGAGCGCCGCCGCTTCGACATCGTTGTCGTCCGGCCATTCTCGTCCATCCCGAAGCAAGCCGCTGTGCCAAGAATCTCGCCTCG
ACCACCTCTTCAAGACGCCTCAAGAACCCTAGCCAGAAACATCAAGAACACGGAGAACACATCCTTTTCTTTCTCGACGCCAATCCGAACTCGCCTCCGC
CGTCATCGTCGATTACCGCTGCCTCGCTCGTCGTCCCGTTCGAGCCGTCGCCGTTCACCCGAGGAGGAGCGCCGCCGTCGAACCGTTCCAACCGAAGCCA
CTTCTATCCAAGCTTCGGCGATTTCTTCCTACAGCTTGGTTTAGACTTAGTCTTTGAGTGATGCGTGTTCCGATTGCTTCTTCTAGGATGAGAACTTAAT
GGGGTAAACCCCTAGTCGGTGTGCTTGTGATTGGGTAGTCAAGCTTCCGCTTTTCTCTAATATGTCTATTTGGCCGGTCGGCCTATGTATTTATTAAGTT
GTTGTAAGTCTTAAGTTTCTTTCATCCTAGTTGTGTTTGCTATGTATAATCATGCTTAAGATGAAAGTGTGGATCTAGTGCACATCCTAGGAACTAGATT
CACATGAGTATGAGTTAGGAATATTTGAGAGGTTGTAAATCTTTAGCCATTTTTGTCAAATCTCCTGAATGTGTAACACATCTGGTCGCCGCCTTCGAGT
GGTTTGGCGAGCACATTTTAGGCCGAAGTTGACTAGCAGGCTAAAGGTCTAGCAATTTCTCCAATATTTCTCTCTCGAGGCGTCGGATGTTTTATTATGC
TTGTTTGATG