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Detailed information on CNT30117261


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678785Oryza nivaraSetaria viridis66.7647.899.8488reverse complement
CNT3011600Oryza nivaraZea mays69.4995.1399.02508forward

Expression of CNT30117261

Peptides detected in this lncRNA

>peptide 1 (68 aa)
ESVRRGAGSQWIVAARPLCHLQCPVAYLSRLQRIQPAARWEGSFEAAGRGASAGPAWPVARALGGLRP*

>peptide 2 (78 aa)
RIRATRGWISVDRGSKATLPLTMPRRVFKSSAKDSARRPLGRELRGGRPRRVGRAGLAGGTGPWGLAPLTWVGAGVQS*

>peptide 3 (93 aa)
MIGRADIEGSKSNVAMNAWLPQASYPCGNFSDTSSFKLRRSKGSIGHAFTVRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTDVPPQPN

Sequence

>CNT30117261
ACGAATCCGTGCGACGCGGGGCTGGATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATGCCCCGTCGCGTATTTAAGTCGTCTGCAAAG
GATTCAGCCCGCCGCCCGTTGGGAAGGGAGCTTCGAGGCGGCCGGCCGCGGCGCGTCGGCCGGGCCGGCTTGGCCGGTGGCACGGGCCCTTGGGGGCTTG
CGCCCCTAACGTGGGTCGGGGCGGGCGTTCAGTCATAATCCGGCACACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGTGA
ATCAACGGTTCCTCTCGTACTAGGTTGAATTACTATCGCGGCACGGTCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGT
TCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAAC
GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAACTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGG
TTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTA
TCTTTTAACAGATGTGCCGCCCCAGCCAAAC